Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3681 and Psest_3682 are separated by 67 nucleotides Psest_3682 and Psest_3683 are separated by 156 nucleotides Psest_3683 and Psest_3684 are separated by 231 nucleotides
Psest_3681: Psest_3681 - DNA primase, catalytic core, at 3,844,476 to 3,846,419
_3681
Psest_3682: Psest_3682 - RNA polymerase sigma factor, sigma-70 family, at 3,846,487 to 3,848,340
_3682
Psest_3683: Psest_3683 - tRNA_Met_CAT, at 3,848,497 to 3,848,573
_3683
Psest_3684: Psest_3684 - Di- and tricarboxylate transporters, at 3,848,805 to 3,850,595
_3684
Position (kb)
3846
3847
3848
3849 Strain fitness (log2 ratio)
-2
-1
0
1 at 3846.425 kb on + strand at 3846.434 kb on + strand at 3848.476 kb on + strand at 3848.703 kb on + strand at 3848.781 kb on + strand at 3848.795 kb on - strand at 3848.873 kb on - strand at 3848.873 kb on - strand at 3849.030 kb on - strand, within Psest_3684 at 3849.087 kb on - strand, within Psest_3684 at 3849.167 kb on + strand, within Psest_3684 at 3849.167 kb on + strand, within Psest_3684 at 3849.168 kb on - strand, within Psest_3684 at 3849.168 kb on - strand, within Psest_3684 at 3849.238 kb on - strand, within Psest_3684 at 3849.238 kb on - strand, within Psest_3684
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,846,425 + +0.8 3,846,434 + -0.1 3,848,476 + +0.4 3,848,703 + -0.5 3,848,781 + -0.8 3,848,795 - -1.8 3,848,873 - +0.2 3,848,873 - -1.4 3,849,030 - Psest_3684 0.13 +1.0 3,849,087 - Psest_3684 0.16 +0.9 3,849,167 + Psest_3684 0.20 -0.3 3,849,167 + Psest_3684 0.20 +1.1 3,849,168 - Psest_3684 0.20 -1.3 3,849,168 - Psest_3684 0.20 -0.2 3,849,238 - Psest_3684 0.24 -0.5 3,849,238 - Psest_3684 0.24 +1.4
Or see this region's nucleotide sequence