Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3682

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3681 and Psest_3682 are separated by 67 nucleotidesPsest_3682 and Psest_3683 are separated by 156 nucleotidesPsest_3683 and Psest_3684 are separated by 231 nucleotides Psest_3681: Psest_3681 - DNA primase, catalytic core, at 3,844,476 to 3,846,419 _3681 Psest_3682: Psest_3682 - RNA polymerase sigma factor, sigma-70 family, at 3,846,487 to 3,848,340 _3682 Psest_3683: Psest_3683 - tRNA_Met_CAT, at 3,848,497 to 3,848,573 _3683 Psest_3684: Psest_3684 - Di- and tricarboxylate transporters, at 3,848,805 to 3,850,595 _3684 Position (kb) 3846 3847 3848 3849Strain fitness (log2 ratio) -2 -1 0 1at 3846.425 kb on + strandat 3846.434 kb on + strandat 3848.476 kb on + strandat 3848.703 kb on + strandat 3848.781 kb on + strandat 3848.795 kb on - strandat 3848.873 kb on - strandat 3848.873 kb on - strandat 3849.030 kb on - strand, within Psest_3684at 3849.087 kb on - strand, within Psest_3684at 3849.167 kb on + strand, within Psest_3684at 3849.167 kb on + strand, within Psest_3684at 3849.168 kb on - strand, within Psest_3684at 3849.168 kb on - strand, within Psest_3684at 3849.238 kb on - strand, within Psest_3684at 3849.238 kb on - strand, within Psest_3684

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,846,425 + +0.8
3,846,434 + -0.1
3,848,476 + +0.4
3,848,703 + -0.5
3,848,781 + -0.8
3,848,795 - -1.8
3,848,873 - +0.2
3,848,873 - -1.4
3,849,030 - Psest_3684 0.13 +1.0
3,849,087 - Psest_3684 0.16 +0.9
3,849,167 + Psest_3684 0.20 -0.3
3,849,167 + Psest_3684 0.20 +1.1
3,849,168 - Psest_3684 0.20 -1.3
3,849,168 - Psest_3684 0.20 -0.2
3,849,238 - Psest_3684 0.24 -0.5
3,849,238 - Psest_3684 0.24 +1.4

Or see this region's nucleotide sequence