Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3639

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3637 and Psest_3638 are separated by 46 nucleotidesPsest_3638 and Psest_3639 are separated by 103 nucleotidesPsest_3639 and Psest_3640 are separated by 128 nucleotidesPsest_3640 and Psest_3641 are separated by 131 nucleotides Psest_3637: Psest_3637 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 3,799,177 to 3,800,268 _3637 Psest_3638: Psest_3638 - Iron-sulfur cluster assembly accessory protein, at 3,800,315 to 3,800,665 _3638 Psest_3639: Psest_3639 - N-acetyl-gamma-glutamyl-phosphate reductase, common form, at 3,800,769 to 3,801,803 _3639 Psest_3640: Psest_3640 - TIGR00701 family protein, at 3,801,932 to 3,802,360 _3640 Psest_3641: Psest_3641 - Predicted membrane protein, at 3,802,492 to 3,803,448 _3641 Position (kb) 3800 3801 3802Strain fitness (log2 ratio) -1 0 1 2 3at 3799.833 kb on - strand, within Psest_3637at 3799.943 kb on + strand, within Psest_3637at 3799.943 kb on + strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3800.042 kb on + strand, within Psest_3637at 3800.043 kb on - strand, within Psest_3637at 3800.043 kb on - strand, within Psest_3637at 3800.062 kb on - strand, within Psest_3637at 3800.112 kb on - strand, within Psest_3637at 3800.151 kb on - strand, within Psest_3637at 3800.257 kb on + strandat 3800.266 kb on + strandat 3800.739 kb on + strandat 3800.750 kb on + strandat 3800.757 kb on + strandat 3800.757 kb on + strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3800.758 kb on - strandat 3801.827 kb on - strandat 3801.827 kb on - strandat 3801.896 kb on + strandat 3801.897 kb on - strandat 3801.897 kb on - strandat 3802.454 kb on + strandat 3802.454 kb on + strandat 3802.454 kb on + strandat 3802.455 kb on - strandat 3802.455 kb on - strandat 3802.455 kb on - strandat 3802.455 kb on - strandat 3802.471 kb on + strandat 3802.471 kb on + strandat 3802.472 kb on - strandat 3802.472 kb on - strandat 3802.634 kb on + strand, within Psest_3641at 3802.669 kb on - strand, within Psest_3641at 3802.672 kb on + strand, within Psest_3641at 3802.672 kb on + strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641at 3802.673 kb on - strand, within Psest_3641

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
3,799,833 - Psest_3637 0.60 +1.7
3,799,943 + Psest_3637 0.70 +1.7
3,799,943 + Psest_3637 0.70 +0.7
3,799,944 - Psest_3637 0.70 +1.7
3,799,944 - Psest_3637 0.70 +1.9
3,799,944 - Psest_3637 0.70 +0.7
3,799,944 - Psest_3637 0.70 +3.7
3,799,944 - Psest_3637 0.70 +1.7
3,800,042 + Psest_3637 0.79 +3.3
3,800,043 - Psest_3637 0.79 +0.7
3,800,043 - Psest_3637 0.79 +1.7
3,800,062 - Psest_3637 0.81 +0.7
3,800,112 - Psest_3637 0.86 +2.7
3,800,151 - Psest_3637 0.89 +1.7
3,800,257 + +1.7
3,800,266 + -0.2
3,800,739 + +0.0
3,800,750 + +0.5
3,800,757 + -0.3
3,800,757 + +1.0
3,800,758 - +1.5
3,800,758 - -1.6
3,800,758 - -0.1
3,800,758 - -0.2
3,800,758 - -1.4
3,800,758 - +0.3
3,800,758 - -0.0
3,800,758 - +0.3
3,801,827 - -1.5
3,801,827 - +0.2
3,801,896 + -0.5
3,801,897 - +0.1
3,801,897 - +0.5
3,802,454 + +0.3
3,802,454 + +0.4
3,802,454 + -0.0
3,802,455 - +0.5
3,802,455 - -0.7
3,802,455 - -1.0
3,802,455 - +0.6
3,802,471 + -1.4
3,802,471 + +0.4
3,802,472 - +0.3
3,802,472 - -0.5
3,802,634 + Psest_3641 0.15 +1.1
3,802,669 - Psest_3641 0.18 +1.1
3,802,672 + Psest_3641 0.19 -1.3
3,802,672 + Psest_3641 0.19 +0.3
3,802,673 - Psest_3641 0.19 +0.6
3,802,673 - Psest_3641 0.19 -0.3
3,802,673 - Psest_3641 0.19 +0.5
3,802,673 - Psest_3641 0.19 -1.4
3,802,673 - Psest_3641 0.19 -0.2
3,802,673 - Psest_3641 0.19 +0.7
3,802,673 - Psest_3641 0.19 +0.4

Or see this region's nucleotide sequence