Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3551

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3550 and Psest_3551 are separated by 11 nucleotidesPsest_3551 and Psest_3552 are separated by 386 nucleotides Psest_3550: Psest_3550 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,728,764 to 3,729,843 _3550 Psest_3551: Psest_3551 - riboflavin synthase, alpha subunit, at 3,729,855 to 3,730,517 _3551 Psest_3552: Psest_3552 - riboflavin biosynthesis protein RibD, at 3,730,904 to 3,732,004 _3552 Position (kb) 3729 3730 3731Strain fitness (log2 ratio) -2 -1 0 1at 3729.044 kb on - strand, within Psest_3550at 3729.172 kb on - strand, within Psest_3550at 3729.172 kb on - strand, within Psest_3550at 3729.172 kb on - strand, within Psest_3550at 3730.587 kb on - strandat 3730.587 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.724 kb on - strandat 3730.812 kb on + strandat 3730.850 kb on + strandat 3730.850 kb on + strandat 3730.851 kb on - strandat 3730.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,729,044 - Psest_3550 0.26 +1.0
3,729,172 - Psest_3550 0.38 +1.0
3,729,172 - Psest_3550 0.38 +0.7
3,729,172 - Psest_3550 0.38 +0.1
3,730,587 - +0.0
3,730,587 - -2.3
3,730,661 - -0.2
3,730,661 - -0.4
3,730,661 - +0.9
3,730,661 - -1.5
3,730,661 - +0.4
3,730,724 - -0.8
3,730,812 + +1.0
3,730,850 + -0.5
3,730,850 + -0.9
3,730,851 - +1.1
3,730,851 - +0.0

Or see this region's nucleotide sequence