Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3457

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3455 and Psest_3456 are separated by 97 nucleotidesPsest_3456 and Psest_3457 overlap by 8 nucleotidesPsest_3457 and Psest_3458 overlap by 4 nucleotidesPsest_3458 and Psest_3459 are separated by 92 nucleotides Psest_3455: Psest_3455 - Dihaem cytochrome c., at 3,627,456 to 3,627,980 _3455 Psest_3456: Psest_3456 - RNA polymerase sigma factor, sigma-70 family, at 3,628,078 to 3,628,638 _3456 Psest_3457: Psest_3457 - hypothetical protein, at 3,628,631 to 3,629,056 _3457 Psest_3458: Psest_3458 - hypothetical protein, at 3,629,053 to 3,629,517 _3458 Psest_3459: Psest_3459 - hypothetical protein, at 3,629,610 to 3,630,092 _3459 Position (kb) 3628 3629 3630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3627.639 kb on + strand, within Psest_3455at 3627.639 kb on + strand, within Psest_3455at 3627.640 kb on - strand, within Psest_3455at 3627.640 kb on - strand, within Psest_3455at 3628.020 kb on + strandat 3628.021 kb on - strandat 3628.021 kb on - strandat 3628.021 kb on - strandat 3628.021 kb on - strandat 3628.032 kb on - strandat 3628.034 kb on + strandat 3628.035 kb on - strandat 3628.517 kb on - strand, within Psest_3456at 3628.517 kb on - strand, within Psest_3456at 3628.517 kb on - strand, within Psest_3456at 3628.668 kb on - strandat 3628.668 kb on - strandat 3629.033 kb on + strandat 3629.044 kb on - strandat 3629.044 kb on - strandat 3629.061 kb on + strandat 3629.255 kb on - strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.560 kb on + strandat 3629.895 kb on + strand, within Psest_3459at 3629.895 kb on + strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.966 kb on - strand, within Psest_3459at 3630.054 kb on + strandat 3630.054 kb on + strandat 3630.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,627,639 + Psest_3455 0.35 -0.1
3,627,639 + Psest_3455 0.35 -0.3
3,627,640 - Psest_3455 0.35 +1.0
3,627,640 - Psest_3455 0.35 +0.5
3,628,020 + +0.6
3,628,021 - +0.9
3,628,021 - +0.5
3,628,021 - -0.6
3,628,021 - -0.6
3,628,032 - -0.5
3,628,034 + +0.3
3,628,035 - -2.6
3,628,517 - Psest_3456 0.78 +0.4
3,628,517 - Psest_3456 0.78 +0.6
3,628,517 - Psest_3456 0.78 +0.7
3,628,668 - +0.4
3,628,668 - -0.4
3,629,033 + -0.6
3,629,044 - -0.0
3,629,044 - +0.8
3,629,061 + +0.4
3,629,255 - Psest_3458 0.43 -0.6
3,629,358 + Psest_3458 0.66 -1.8
3,629,358 + Psest_3458 0.66 +0.3
3,629,358 + Psest_3458 0.66 -2.9
3,629,358 + Psest_3458 0.66 -0.2
3,629,359 - Psest_3458 0.66 +2.0
3,629,359 - Psest_3458 0.66 -0.4
3,629,359 - Psest_3458 0.66 -2.2
3,629,359 - Psest_3458 0.66 -1.3
3,629,359 - Psest_3458 0.66 -0.9
3,629,560 + -0.7
3,629,895 + Psest_3459 0.59 -0.2
3,629,895 + Psest_3459 0.59 -0.0
3,629,896 - Psest_3459 0.59 -1.9
3,629,896 - Psest_3459 0.59 +0.7
3,629,896 - Psest_3459 0.59 -0.1
3,629,896 - Psest_3459 0.59 +0.3
3,629,896 - Psest_3459 0.59 -0.3
3,629,896 - Psest_3459 0.59 -0.3
3,629,966 - Psest_3459 0.74 +0.3
3,630,054 + +0.6
3,630,054 + +0.2
3,630,055 - +0.2

Or see this region's nucleotide sequence