Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0338 and Psest_0339 are separated by 163 nucleotides Psest_0339 and Psest_0340 are separated by 63 nucleotides Psest_0340 and Psest_0341 are separated by 20 nucleotides
Psest_0338: Psest_0338 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 359,798 to 362,008
_0338
Psest_0339: Psest_0339 - hypothetical protein, at 362,172 to 362,501
_0339
Psest_0340: Psest_0340 - hypothetical protein, at 362,565 to 362,747
_0340
Psest_0341: Psest_0341 - flavoprotein, HI0933 family, at 362,768 to 363,952
_0341
Position (kb) 362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 361.262 kb on + strand, within Psest_0338 at 361.299 kb on - strand, within Psest_0338 at 361.475 kb on + strand, within Psest_0338 at 361.475 kb on + strand, within Psest_0338 at 361.476 kb on - strand, within Psest_0338 at 361.476 kb on - strand, within Psest_0338 at 361.706 kb on + strand, within Psest_0338 at 361.984 kb on - strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.180 kb on + strand at 362.181 kb on - strand at 362.181 kb on - strand at 362.181 kb on - strand at 362.181 kb on - strand at 362.181 kb on - strand at 362.181 kb on - strand at 362.184 kb on + strand at 362.184 kb on + strand at 362.184 kb on + strand at 362.184 kb on + strand at 362.184 kb on + strand at 362.185 kb on - strand at 362.185 kb on - strand at 362.185 kb on - strand at 362.185 kb on - strand at 362.577 kb on + strand at 362.577 kb on + strand at 362.577 kb on + strand at 362.577 kb on + strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.578 kb on - strand at 362.581 kb on + strand at 362.581 kb on + strand at 362.582 kb on - strand at 362.775 kb on + strand at 362.775 kb on + strand at 362.775 kb on + strand at 362.775 kb on + strand at 362.775 kb on + strand at 362.775 kb on + strand at 362.776 kb on - strand at 362.776 kb on - strand at 362.776 kb on - strand at 362.776 kb on - strand at 362.776 kb on - strand at 362.776 kb on - strand at 362.865 kb on + strand at 362.865 kb on + strand at 362.865 kb on + strand at 362.865 kb on + strand at 362.865 kb on + strand at 362.865 kb on + strand at 362.866 kb on - strand at 362.866 kb on - strand at 363.023 kb on + strand, within Psest_0341 at 363.023 kb on + strand, within Psest_0341 at 363.024 kb on - strand, within Psest_0341 at 363.027 kb on + strand, within Psest_0341 at 363.027 kb on + strand, within Psest_0341 at 363.027 kb on + strand, within Psest_0341 at 363.027 kb on + strand, within Psest_0341 at 363.028 kb on - strand, within Psest_0341 at 363.028 kb on - strand, within Psest_0341 at 363.028 kb on - strand, within Psest_0341 at 363.188 kb on - strand, within Psest_0341 at 363.188 kb on - strand, within Psest_0341 at 363.214 kb on - strand, within Psest_0341 at 363.221 kb on + strand, within Psest_0341 at 363.222 kb on - strand, within Psest_0341 at 363.222 kb on - strand, within Psest_0341 at 363.222 kb on - strand, within Psest_0341 at 363.222 kb on - strand, within Psest_0341 at 363.222 kb on - strand, within Psest_0341 at 363.222 kb on - strand, within Psest_0341 at 363.314 kb on + strand, within Psest_0341 at 363.329 kb on + strand, within Psest_0341
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 361,262 + Psest_0338 0.66 -1.2 361,299 - Psest_0338 0.68 -0.1 361,475 + Psest_0338 0.76 -0.0 361,475 + Psest_0338 0.76 +0.8 361,476 - Psest_0338 0.76 -0.1 361,476 - Psest_0338 0.76 +0.6 361,706 + Psest_0338 0.86 -0.5 361,984 - -0.2 362,180 + +0.9 362,180 + +1.0 362,180 + -0.7 362,180 + -2.8 362,180 + -1.3 362,180 + -0.4 362,180 + -0.9 362,180 + -0.7 362,180 + +0.6 362,181 - -0.0 362,181 - +1.4 362,181 - -0.3 362,181 - -0.8 362,181 - -0.0 362,181 - -0.7 362,184 + +1.5 362,184 + -0.2 362,184 + -0.4 362,184 + -0.6 362,184 + -0.7 362,185 - +0.0 362,185 - -2.3 362,185 - +0.7 362,185 - +1.0 362,577 + -0.2 362,577 + +0.1 362,577 + -1.1 362,577 + +0.1 362,578 - -2.0 362,578 - -0.3 362,578 - +0.3 362,578 - +0.4 362,578 - +0.9 362,578 - +0.6 362,578 - -1.7 362,578 - -0.7 362,578 - -0.2 362,581 + +1.9 362,581 + -2.6 362,582 - +0.9 362,775 + +2.2 362,775 + -0.2 362,775 + +0.2 362,775 + -0.2 362,775 + +0.7 362,775 + +0.4 362,776 - +0.2 362,776 - -0.1 362,776 - +0.5 362,776 - +0.3 362,776 - +0.0 362,776 - -0.0 362,865 + +0.1 362,865 + +0.5 362,865 + +0.5 362,865 + +2.5 362,865 + -0.7 362,865 + -0.1 362,866 - +1.5 362,866 - +0.5 363,023 + Psest_0341 0.22 +0.3 363,023 + Psest_0341 0.22 -0.7 363,024 - Psest_0341 0.22 +0.4 363,027 + Psest_0341 0.22 -0.4 363,027 + Psest_0341 0.22 +0.1 363,027 + Psest_0341 0.22 -0.4 363,027 + Psest_0341 0.22 -0.2 363,028 - Psest_0341 0.22 -1.1 363,028 - Psest_0341 0.22 +0.4 363,028 - Psest_0341 0.22 -0.5 363,188 - Psest_0341 0.35 -1.5 363,188 - Psest_0341 0.35 -0.9 363,214 - Psest_0341 0.38 -1.2 363,221 + Psest_0341 0.38 -1.2 363,222 - Psest_0341 0.38 -0.3 363,222 - Psest_0341 0.38 +0.3 363,222 - Psest_0341 0.38 +1.3 363,222 - Psest_0341 0.38 -2.5 363,222 - Psest_0341 0.38 +1.3 363,222 - Psest_0341 0.38 -2.2 363,314 + Psest_0341 0.46 +0.5 363,329 + Psest_0341 0.47 -0.2
Or see this region's nucleotide sequence