Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3379

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3377 and Psest_3378 overlap by 8 nucleotidesPsest_3378 and Psest_3379 are separated by 36 nucleotidesPsest_3379 and Psest_3380 are separated by 1 nucleotides Psest_3377: Psest_3377 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 3,547,117 to 3,547,554 _3377 Psest_3378: Psest_3378 - lipoprotein signal peptidase, at 3,547,547 to 3,548,050 _3378 Psest_3379: Psest_3379 - isoleucyl-tRNA synthetase, at 3,548,087 to 3,550,918 _3379 Psest_3380: Psest_3380 - riboflavin kinase/FMN adenylyltransferase, at 3,550,920 to 3,551,870 _3380 Position (kb) 3548 3549 3550 3551Strain fitness (log2 ratio) -1 0 1at 3547.397 kb on + strand, within Psest_3377at 3551.902 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,547,397 + Psest_3377 0.64 +0.6
3,551,902 - +0.3
3,551,904 - -1.1
3,551,904 - -0.2
3,551,904 - -0.5
3,551,904 - +0.2
3,551,904 - -0.0
3,551,904 - -0.0

Or see this region's nucleotide sequence