Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0033

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0032 and Psest_0033 are separated by 149 nucleotidesPsest_0033 and Psest_0034 are separated by 125 nucleotides Psest_0032: Psest_0032 - D-alanyl-D-alanine carboxypeptidase, at 31,732 to 32,670 _0032 Psest_0033: Psest_0033 - Protein of unknown function (DUF2946)., at 32,820 to 33,233 _0033 Psest_0034: Psest_0034 - Outer membrane receptor proteins, mostly Fe transport, at 33,359 to 35,407 _0034 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.863 kb on + strand, within Psest_0032at 31.864 kb on - strand, within Psest_0032at 31.879 kb on + strand, within Psest_0032at 31.879 kb on + strand, within Psest_0032at 31.879 kb on + strand, within Psest_0032at 31.880 kb on - strand, within Psest_0032at 31.880 kb on - strand, within Psest_0032at 31.880 kb on - strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.279 kb on - strand, within Psest_0032at 32.301 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strandat 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.454 kb on + strand, within Psest_0032at 32.454 kb on + strand, within Psest_0032at 32.455 kb on - strand, within Psest_0032at 32.455 kb on - strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.506 kb on + strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.507 kb on - strand, within Psest_0032at 32.514 kb on + strand, within Psest_0032at 32.590 kb on + strandat 32.591 kb on - strandat 32.591 kb on - strandat 32.591 kb on - strandat 32.736 kb on + strandat 32.778 kb on + strandat 33.259 kb on + strandat 33.259 kb on + strandat 33.434 kb on + strandat 33.434 kb on + strandat 33.435 kb on - strandat 33.435 kb on - strandat 33.593 kb on + strand, within Psest_0034at 33.593 kb on + strand, within Psest_0034at 33.594 kb on - strand, within Psest_0034at 33.764 kb on + strand, within Psest_0034at 33.842 kb on + strand, within Psest_0034at 33.842 kb on + strand, within Psest_0034at 33.843 kb on - strand, within Psest_0034at 33.843 kb on - strand, within Psest_0034at 33.843 kb on - strand, within Psest_0034at 33.843 kb on - strand, within Psest_0034at 33.890 kb on + strand, within Psest_0034at 33.920 kb on + strand, within Psest_0034at 33.920 kb on + strand, within Psest_0034at 33.921 kb on - strand, within Psest_0034at 33.921 kb on - strand, within Psest_0034at 33.921 kb on - strand, within Psest_0034at 33.980 kb on + strand, within Psest_0034at 33.980 kb on + strand, within Psest_0034at 33.980 kb on + strand, within Psest_0034at 33.980 kb on + strand, within Psest_0034at 33.980 kb on + strand, within Psest_0034at 33.981 kb on - strand, within Psest_0034at 33.981 kb on - strand, within Psest_0034at 33.981 kb on - strand, within Psest_0034at 34.061 kb on + strand, within Psest_0034at 34.061 kb on + strand, within Psest_0034at 34.061 kb on + strand, within Psest_0034at 34.062 kb on - strand, within Psest_0034at 34.079 kb on - strand, within Psest_0034at 34.109 kb on + strand, within Psest_0034at 34.110 kb on - strand, within Psest_0034at 34.136 kb on + strand, within Psest_0034at 34.179 kb on - strand, within Psest_0034

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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31,863 + Psest_0032 0.14 -0.8
31,864 - Psest_0032 0.14 -0.4
31,879 + Psest_0032 0.16 +0.8
31,879 + Psest_0032 0.16 -0.3
31,879 + Psest_0032 0.16 +0.2
31,880 - Psest_0032 0.16 +1.2
31,880 - Psest_0032 0.16 -0.2
31,880 - Psest_0032 0.16 -0.4
32,194 + Psest_0032 0.49 +0.5
32,194 + Psest_0032 0.49 +0.0
32,194 + Psest_0032 0.49 +0.9
32,194 + Psest_0032 0.49 +0.6
32,194 + Psest_0032 0.49 +0.4
32,194 + Psest_0032 0.49 -0.7
32,195 - Psest_0032 0.49 +0.4
32,195 - Psest_0032 0.49 -0.0
32,195 - Psest_0032 0.49 -0.3
32,195 - Psest_0032 0.49 +0.8
32,195 - Psest_0032 0.49 +1.0
32,197 + Psest_0032 0.50 -0.8
32,197 + Psest_0032 0.50 -0.8
32,197 + Psest_0032 0.50 +1.0
32,197 + Psest_0032 0.50 -0.9
32,197 + Psest_0032 0.50 -0.7
32,197 + Psest_0032 0.50 -0.7
32,197 + Psest_0032 0.50 +0.1
32,197 + Psest_0032 0.50 -2.2
32,197 + Psest_0032 0.50 +0.5
32,198 - Psest_0032 0.50 -0.3
32,198 - Psest_0032 0.50 -0.2
32,198 - Psest_0032 0.50 -0.6
32,198 - Psest_0032 0.50 +1.7
32,198 - Psest_0032 0.50 +1.9
32,198 - Psest_0032 0.50 -0.1
32,198 - Psest_0032 0.50 -0.0
32,279 - Psest_0032 0.58 +1.2
32,301 + Psest_0032 0.61 -1.5
32,341 + Psest_0032 0.65 +0.6
32,341 + Psest_0032 0.65 +1.0
32,341 + Psest_0032 0.65 -1.8
32,341 + Psest_0032 0.65 +0.3
32,341 + Psest_0032 0.65 -0.5
32,341 + Psest_0032 0.65 +0.8
32,342 - Psest_0032 0.65 +0.1
32,342 - Psest_0032 0.65 +0.2
32,342 - Psest_0032 0.65 +1.8
32,342 - Psest_0032 0.65 +0.3
32,342 - Psest_0032 0.65 +1.3
32,342 - Psest_0032 0.65 -0.5
32,342 - Psest_0032 0.65 +0.1
32,342 - Psest_0032 0.65 +1.1
32,342 - -1.8
32,342 - Psest_0032 0.65 +0.2
32,342 - Psest_0032 0.65 -0.5
32,454 + Psest_0032 0.77 +0.3
32,454 + Psest_0032 0.77 -0.2
32,455 - Psest_0032 0.77 -0.7
32,455 - Psest_0032 0.77 +0.8
32,506 + Psest_0032 0.82 -1.4
32,506 + Psest_0032 0.82 -0.3
32,506 + Psest_0032 0.82 -0.2
32,506 + Psest_0032 0.82 +0.8
32,506 + Psest_0032 0.82 +0.9
32,506 + Psest_0032 0.82 -0.2
32,506 + Psest_0032 0.82 +0.3
32,507 - Psest_0032 0.83 -0.1
32,507 - Psest_0032 0.83 +0.8
32,507 - Psest_0032 0.83 -1.1
32,507 - Psest_0032 0.83 +0.5
32,507 - Psest_0032 0.83 -0.1
32,507 - Psest_0032 0.83 +0.8
32,507 - Psest_0032 0.83 +0.9
32,514 + Psest_0032 0.83 +0.7
32,590 + +0.3
32,591 - -0.3
32,591 - -0.4
32,591 - -0.5
32,736 + -0.2
32,778 + +0.5
33,259 + +1.0
33,259 + +0.8
33,434 + -0.1
33,434 + -0.9
33,435 - +0.2
33,435 - -0.3
33,593 + Psest_0034 0.11 +0.2
33,593 + Psest_0034 0.11 -0.8
33,594 - Psest_0034 0.11 +0.2
33,764 + Psest_0034 0.20 +1.4
33,842 + Psest_0034 0.24 -0.6
33,842 + Psest_0034 0.24 -1.3
33,843 - Psest_0034 0.24 +0.5
33,843 - Psest_0034 0.24 -0.0
33,843 - Psest_0034 0.24 -0.2
33,843 - Psest_0034 0.24 -2.1
33,890 + Psest_0034 0.26 -0.3
33,920 + Psest_0034 0.27 +0.5
33,920 + Psest_0034 0.27 -0.1
33,921 - Psest_0034 0.27 -0.0
33,921 - Psest_0034 0.27 +0.5
33,921 - Psest_0034 0.27 -2.1
33,980 + Psest_0034 0.30 -2.5
33,980 + Psest_0034 0.30 +2.2
33,980 + Psest_0034 0.30 -0.6
33,980 + Psest_0034 0.30 +0.3
33,980 + Psest_0034 0.30 +0.9
33,981 - Psest_0034 0.30 -0.3
33,981 - Psest_0034 0.30 +0.9
33,981 - Psest_0034 0.30 +1.2
34,061 + Psest_0034 0.34 +0.2
34,061 + Psest_0034 0.34 -0.1
34,061 + Psest_0034 0.34 +0.7
34,062 - Psest_0034 0.34 +0.3
34,079 - Psest_0034 0.35 +0.9
34,109 + Psest_0034 0.37 -1.5
34,110 - Psest_0034 0.37 +0.9
34,136 + Psest_0034 0.38 +0.2
34,179 - Psest_0034 0.40 -0.2

Or see this region's nucleotide sequence