Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3293

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3291 and Psest_3292 are separated by 8 nucleotidesPsest_3292 and Psest_3293 are separated by 136 nucleotidesPsest_3293 and Psest_3294 are separated by 11 nucleotides Psest_3291: Psest_3291 - Lipid A core - O-antigen ligase and related enzymes, at 3,456,711 to 3,458,168 _3291 Psest_3292: Psest_3292 - hypothetical protein, at 3,458,177 to 3,458,914 _3292 Psest_3293: Psest_3293 - sulfate adenylyltransferase, large subunit, at 3,459,051 to 3,460,949 _3293 Psest_3294: Psest_3294 - sulfate adenylyltransferase, small subunit, at 3,460,961 to 3,461,878 _3294 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -2 -1 0 1 2at 3458.122 kb on + strandat 3458.122 kb on + strandat 3458.122 kb on + strandat 3458.175 kb on - strandat 3458.175 kb on - strandat 3458.175 kb on - strandat 3458.176 kb on + strandat 3458.176 kb on + strandat 3458.176 kb on + strandat 3458.177 kb on - strandat 3458.177 kb on - strandat 3458.177 kb on - strandat 3458.177 kb on - strandat 3458.177 kb on - strandat 3458.177 kb on - strandat 3458.322 kb on + strand, within Psest_3292at 3458.325 kb on + strand, within Psest_3292at 3458.337 kb on + strand, within Psest_3292at 3458.338 kb on - strand, within Psest_3292at 3458.441 kb on + strand, within Psest_3292at 3458.442 kb on - strand, within Psest_3292at 3458.759 kb on + strand, within Psest_3292at 3458.759 kb on + strand, within Psest_3292at 3458.760 kb on - strand, within Psest_3292at 3458.798 kb on + strand, within Psest_3292at 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.883 kb on + strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.884 kb on - strandat 3458.912 kb on + strandat 3458.912 kb on + strandat 3458.913 kb on - strandat 3459.052 kb on + strandat 3459.052 kb on + strandat 3459.053 kb on - strandat 3459.053 kb on - strandat 3459.053 kb on - strandat 3459.073 kb on - strandat 3459.073 kb on - strandat 3459.073 kb on - strandat 3459.073 kb on - strandat 3459.251 kb on - strand, within Psest_3293at 3460.963 kb on - strandat 3460.963 kb on - strandat 3460.963 kb on - strandat 3460.963 kb on - strandat 3461.936 kb on - strandat 3461.936 kb on - strandat 3461.946 kb on + strandat 3461.947 kb on - strandat 3461.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,458,122 + +0.0
3,458,122 + +1.9
3,458,122 + +0.4
3,458,175 - -0.4
3,458,175 - -1.0
3,458,175 - +0.7
3,458,176 + -0.8
3,458,176 + -0.0
3,458,176 + +1.3
3,458,177 - -0.3
3,458,177 - +2.7
3,458,177 - -0.9
3,458,177 - +0.2
3,458,177 - -0.4
3,458,177 - +0.5
3,458,322 + Psest_3292 0.20 +0.0
3,458,325 + Psest_3292 0.20 -0.7
3,458,337 + Psest_3292 0.22 -0.2
3,458,338 - Psest_3292 0.22 +2.4
3,458,441 + Psest_3292 0.36 -0.3
3,458,442 - Psest_3292 0.36 +0.9
3,458,759 + Psest_3292 0.79 +1.7
3,458,759 + Psest_3292 0.79 -0.2
3,458,760 - Psest_3292 0.79 +0.7
3,458,798 + Psest_3292 0.84 -1.6
3,458,883 + -0.1
3,458,883 + +0.9
3,458,883 + +0.4
3,458,883 + -1.1
3,458,883 + +0.8
3,458,883 + -0.7
3,458,883 + +0.7
3,458,883 + +0.8
3,458,883 + +0.2
3,458,883 + +1.5
3,458,883 + +0.3
3,458,883 + -0.6
3,458,883 + +0.4
3,458,883 + -1.0
3,458,883 + -0.8
3,458,884 - -0.0
3,458,884 - +0.7
3,458,884 - -0.1
3,458,884 - -0.9
3,458,884 - +0.6
3,458,884 - -0.6
3,458,884 - +0.6
3,458,884 - -0.0
3,458,912 + -0.9
3,458,912 + +0.0
3,458,913 - -0.4
3,459,052 + +0.4
3,459,052 + +0.4
3,459,053 - -0.1
3,459,053 - +1.7
3,459,053 - -0.6
3,459,073 - -1.4
3,459,073 - -0.1
3,459,073 - -2.2
3,459,073 - +0.7
3,459,251 - Psest_3293 0.11 +1.6
3,460,963 - -1.4
3,460,963 - +0.0
3,460,963 - +0.1
3,460,963 - -1.5
3,461,936 - -0.0
3,461,936 - +0.4
3,461,946 + +0.6
3,461,947 - +0.1
3,461,947 - +0.1

Or see this region's nucleotide sequence