Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0324

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0323 and Psest_0324 are separated by 14 nucleotidesPsest_0324 and Psest_0325 are separated by 94 nucleotidesPsest_0325 and Psest_0326 overlap by 4 nucleotides Psest_0323: Psest_0323 - S-adenosylmethionine synthetase, at 345,931 to 347,121 _0323 Psest_0324: Psest_0324 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 347,136 to 348,125 _0324 Psest_0325: Psest_0325 - Putative threonine efflux protein, at 348,220 to 348,822 _0325 Psest_0326: Psest_0326 - Taurine catabolism dioxygenase TauD, TfdA family., at 348,819 to 349,715 _0326 Position (kb) 347 348 349Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 347.135 kb on - strandat 347.135 kb on - strandat 347.135 kb on - strandat 347.135 kb on - strandat 347.135 kb on - strandat 347.135 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.219 kb on - strandat 347.900 kb on - strand, within Psest_0324at 347.900 kb on - strand, within Psest_0324at 348.046 kb on - strandat 348.046 kb on - strandat 348.046 kb on - strandat 348.115 kb on - strandat 348.138 kb on - strandat 348.138 kb on - strandat 348.222 kb on - strandat 348.282 kb on - strand, within Psest_0325at 348.491 kb on - strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.658 kb on + strand, within Psest_0325at 348.659 kb on - strand, within Psest_0325at 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.823 kb on - strandat 348.823 kb on - strandat 348.823 kb on - strandat 348.874 kb on + strandat 348.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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347,135 - +0.3
347,135 - -0.9
347,135 - +0.6
347,135 - +0.9
347,135 - +0.4
347,135 - -1.1
347,219 - -0.2
347,219 - -0.7
347,219 - +0.1
347,219 - +0.2
347,219 - +0.2
347,219 - -0.1
347,219 - +0.6
347,219 - -0.6
347,900 - Psest_0324 0.77 +0.4
347,900 - Psest_0324 0.77 -1.3
348,046 - -0.2
348,046 - -1.1
348,046 - +0.4
348,115 - -0.3
348,138 - +0.1
348,138 - +0.3
348,222 - +0.4
348,282 - Psest_0325 0.10 +0.9
348,491 - Psest_0325 0.45 -3.1
348,512 + Psest_0325 0.48 -4.8
348,512 + Psest_0325 0.48 -2.9
348,512 + Psest_0325 0.48 -2.5
348,512 + Psest_0325 0.48 -3.6
348,512 + Psest_0325 0.48 -1.2
348,512 + Psest_0325 0.48 -0.9
348,512 + Psest_0325 0.48 -3.9
348,512 + Psest_0325 0.48 -2.6
348,512 + Psest_0325 0.48 -3.4
348,512 + Psest_0325 0.48 -0.6
348,513 - Psest_0325 0.49 -0.6
348,513 - Psest_0325 0.49 -3.6
348,513 - Psest_0325 0.49 -2.7
348,513 - Psest_0325 0.49 -2.7
348,513 - Psest_0325 0.49 -1.9
348,513 - Psest_0325 0.49 -2.5
348,513 - Psest_0325 0.49 -2.4
348,513 - Psest_0325 0.49 -4.5
348,513 - Psest_0325 0.49 -3.1
348,513 - Psest_0325 0.49 -5.3
348,590 + Psest_0325 0.61 -2.2
348,590 + Psest_0325 0.61 -4.7
348,590 + Psest_0325 0.61 -4.0
348,590 + Psest_0325 0.61 -3.2
348,591 - Psest_0325 0.62 -3.9
348,591 - Psest_0325 0.62 -3.8
348,591 - Psest_0325 0.62 -2.0
348,591 - Psest_0325 0.62 -3.1
348,591 - Psest_0325 0.62 -1.0
348,650 + Psest_0325 0.71 -1.7
348,650 + Psest_0325 0.71 -2.7
348,650 + Psest_0325 0.71 -1.4
348,650 + Psest_0325 0.71 -2.2
348,650 + Psest_0325 0.71 -4.3
348,650 + Psest_0325 0.71 -2.4
348,650 + Psest_0325 0.71 -3.7
348,650 + Psest_0325 0.71 -1.4
348,650 + Psest_0325 0.71 -3.3
348,650 + Psest_0325 0.71 -5.0
348,650 + Psest_0325 0.71 -3.8
348,651 - Psest_0325 0.71 -0.6
348,651 - Psest_0325 0.71 -2.4
348,651 - Psest_0325 0.71 -3.0
348,651 - Psest_0325 0.71 -1.8
348,651 - Psest_0325 0.71 -2.4
348,651 - Psest_0325 0.71 -3.9
348,651 - Psest_0325 0.71 -4.1
348,658 + Psest_0325 0.73 -3.2
348,659 - Psest_0325 0.73 -3.8
348,809 + -4.9
348,809 + -3.7
348,809 + -3.0
348,809 + -3.9
348,809 + -5.5
348,809 + -3.2
348,809 + -2.1
348,809 + -3.7
348,809 + -2.3
348,809 + -4.9
348,822 + -5.7
348,822 + -2.2
348,822 + -1.4
348,822 + -4.5
348,822 + -5.8
348,822 + -1.3
348,822 + -3.9
348,822 + -3.0
348,822 + -2.9
348,822 + -3.9
348,822 + -6.0
348,822 + -0.9
348,822 + -2.9
348,823 - -1.3
348,823 - -2.5
348,823 - -1.3
348,874 + -0.6
348,874 + -3.6

Or see this region's nucleotide sequence