Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3253

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3250 and Psest_3251 are separated by 9 nucleotidesPsest_3251 and Psest_3252 are separated by 79 nucleotidesPsest_3252 and Psest_3253 are separated by 112 nucleotidesPsest_3253 and Psest_3254 are separated by 115 nucleotides Psest_3250: Psest_3250 - Rho termination factor, N-terminal domain., at 3,419,542 to 3,419,940 _3250 Psest_3251: Psest_3251 - hypothetical protein, at 3,419,950 to 3,420,081 _3251 Psest_3252: Psest_3252 - Bacterioferritin (cytochrome b1), at 3,420,161 to 3,420,694 _3252 Psest_3253: Psest_3253 - UDP-3-0-acyl N-acetylglucosamine deacetylase, at 3,420,807 to 3,421,718 _3253 Psest_3254: Psest_3254 - cell division protein FtsZ, at 3,421,834 to 3,423,021 _3254 Position (kb) 3420 3421 3422Strain fitness (log2 ratio) -2 -1 0 1 2at 3419.829 kb on + strand, within Psest_3250at 3419.830 kb on - strand, within Psest_3250at 3419.830 kb on - strand, within Psest_3250at 3419.830 kb on - strand, within Psest_3250at 3419.839 kb on - strand, within Psest_3250at 3419.861 kb on + strand, within Psest_3250at 3419.862 kb on - strand, within Psest_3250at 3419.862 kb on - strand, within Psest_3250at 3419.910 kb on + strandat 3419.911 kb on - strandat 3419.921 kb on + strandat 3419.922 kb on - strandat 3419.943 kb on + strandat 3419.944 kb on - strandat 3420.167 kb on + strandat 3420.167 kb on + strandat 3420.167 kb on + strandat 3420.167 kb on + strandat 3420.167 kb on + strandat 3420.167 kb on + strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.168 kb on - strandat 3420.171 kb on + strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.172 kb on - strandat 3420.245 kb on + strand, within Psest_3252at 3420.246 kb on - strand, within Psest_3252at 3420.246 kb on - strand, within Psest_3252at 3420.333 kb on - strand, within Psest_3252at 3420.333 kb on - strand, within Psest_3252at 3420.333 kb on - strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.335 kb on + strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.336 kb on - strand, within Psest_3252at 3420.431 kb on - strand, within Psest_3252at 3420.497 kb on + strand, within Psest_3252at 3420.498 kb on - strand, within Psest_3252at 3420.498 kb on - strand, within Psest_3252at 3420.565 kb on + strand, within Psest_3252at 3420.569 kb on + strand, within Psest_3252at 3420.587 kb on + strand, within Psest_3252at 3420.587 kb on + strand, within Psest_3252at 3420.587 kb on + strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.588 kb on - strand, within Psest_3252at 3420.736 kb on - strandat 3420.736 kb on - strandat 3420.736 kb on - strandat 3420.757 kb on - strandat 3420.832 kb on + strandat 3420.833 kb on - strandat 3420.833 kb on - strandat 3420.833 kb on - strandat 3420.833 kb on - strandat 3421.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,419,829 + Psest_3250 0.72 +0.6
3,419,830 - Psest_3250 0.72 -1.9
3,419,830 - Psest_3250 0.72 -0.0
3,419,830 - Psest_3250 0.72 -0.0
3,419,839 - Psest_3250 0.74 +0.5
3,419,861 + Psest_3250 0.80 +1.0
3,419,862 - Psest_3250 0.80 +1.2
3,419,862 - Psest_3250 0.80 +0.2
3,419,910 + -1.6
3,419,911 - +0.0
3,419,921 + +1.2
3,419,922 - +2.3
3,419,943 + +1.1
3,419,944 - +0.4
3,420,167 + +0.7
3,420,167 + -0.9
3,420,167 + +2.3
3,420,167 + +0.9
3,420,167 + +0.5
3,420,167 + -0.2
3,420,168 - -0.3
3,420,168 - -0.7
3,420,168 - -1.2
3,420,168 - +1.0
3,420,168 - +0.7
3,420,168 - -0.1
3,420,168 - +0.7
3,420,168 - +0.3
3,420,168 - +1.0
3,420,171 + +1.1
3,420,172 - -0.5
3,420,172 - +0.2
3,420,172 - -0.2
3,420,172 - +0.6
3,420,172 - -1.4
3,420,172 - +1.8
3,420,172 - +0.4
3,420,172 - -0.1
3,420,172 - +0.9
3,420,172 - +0.2
3,420,172 - -0.0
3,420,172 - -0.5
3,420,245 + Psest_3252 0.16 +0.0
3,420,246 - Psest_3252 0.16 +0.8
3,420,246 - Psest_3252 0.16 +1.4
3,420,333 - Psest_3252 0.32 -1.8
3,420,333 - Psest_3252 0.32 -0.8
3,420,333 - Psest_3252 0.32 -0.4
3,420,335 + Psest_3252 0.33 +0.2
3,420,335 + Psest_3252 0.33 +0.2
3,420,335 + Psest_3252 0.33 -0.1
3,420,335 + Psest_3252 0.33 -0.2
3,420,335 + Psest_3252 0.33 +0.0
3,420,335 + Psest_3252 0.33 -0.2
3,420,335 + Psest_3252 0.33 +0.3
3,420,335 + Psest_3252 0.33 +0.2
3,420,335 + Psest_3252 0.33 +0.0
3,420,335 + Psest_3252 0.33 +0.5
3,420,335 + Psest_3252 0.33 -0.1
3,420,335 + Psest_3252 0.33 -0.4
3,420,335 + Psest_3252 0.33 -0.2
3,420,336 - Psest_3252 0.33 +0.2
3,420,336 - Psest_3252 0.33 -1.2
3,420,336 - Psest_3252 0.33 -0.3
3,420,336 - Psest_3252 0.33 -0.4
3,420,336 - Psest_3252 0.33 -0.7
3,420,336 - Psest_3252 0.33 -0.6
3,420,336 - Psest_3252 0.33 +1.6
3,420,336 - Psest_3252 0.33 +0.7
3,420,336 - Psest_3252 0.33 -0.4
3,420,336 - Psest_3252 0.33 +0.2
3,420,336 - Psest_3252 0.33 -0.3
3,420,336 - Psest_3252 0.33 +0.9
3,420,336 - Psest_3252 0.33 +0.1
3,420,336 - Psest_3252 0.33 -0.5
3,420,336 - Psest_3252 0.33 -1.0
3,420,336 - Psest_3252 0.33 +0.0
3,420,336 - Psest_3252 0.33 -0.8
3,420,431 - Psest_3252 0.51 -0.5
3,420,497 + Psest_3252 0.63 +0.7
3,420,498 - Psest_3252 0.63 +1.5
3,420,498 - Psest_3252 0.63 +1.0
3,420,565 + Psest_3252 0.76 -0.2
3,420,569 + Psest_3252 0.76 +0.5
3,420,587 + Psest_3252 0.80 -0.1
3,420,587 + Psest_3252 0.80 -1.2
3,420,587 + Psest_3252 0.80 +0.6
3,420,588 - Psest_3252 0.80 +1.6
3,420,588 - Psest_3252 0.80 +0.3
3,420,588 - Psest_3252 0.80 -0.3
3,420,588 - Psest_3252 0.80 -0.2
3,420,588 - Psest_3252 0.80 +0.3
3,420,588 - Psest_3252 0.80 +1.1
3,420,588 - Psest_3252 0.80 -0.1
3,420,736 - +1.3
3,420,736 - -0.9
3,420,736 - +0.3
3,420,757 - +0.3
3,420,832 + -1.2
3,420,833 - -0.8
3,420,833 - -1.1
3,420,833 - -0.8
3,420,833 - -1.2
3,421,779 - +0.2

Or see this region's nucleotide sequence