Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0317

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0315 and Psest_0316 are separated by 107 nucleotidesPsest_0316 and Psest_0317 are separated by 9 nucleotidesPsest_0317 and Psest_0318 are separated by 60 nucleotides Psest_0315: Psest_0315 - hypothetical protein, at 338,914 to 339,351 _0315 Psest_0316: Psest_0316 - Cytochrome c556, at 339,459 to 339,905 _0316 Psest_0317: Psest_0317 - Protein of unknown function (DUF1090)., at 339,915 to 340,295 _0317 Psest_0318: Psest_0318 - NAD-dependent DNA ligase (contains BRCT domain type II), at 340,356 to 342,020 _0318 Position (kb) 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1at 338.989 kb on + strand, within Psest_0315at 338.989 kb on + strand, within Psest_0315at 338.990 kb on - strand, within Psest_0315at 338.990 kb on - strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 339.060 kb on + strand, within Psest_0315at 339.060 kb on + strand, within Psest_0315at 339.251 kb on + strand, within Psest_0315at 339.251 kb on + strand, within Psest_0315at 339.251 kb on + strand, within Psest_0315at 339.252 kb on - strand, within Psest_0315at 339.252 kb on - strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.283 kb on + strand, within Psest_0315at 339.425 kb on - strandat 339.503 kb on - strandat 339.503 kb on - strandat 339.561 kb on + strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.916 kb on + strandat 339.917 kb on - strandat 340.032 kb on + strand, within Psest_0317at 340.055 kb on - strand, within Psest_0317at 340.308 kb on + strandat 340.308 kb on + strandat 340.308 kb on + strandat 340.308 kb on + strandat 340.309 kb on - strandat 340.309 kb on - strandat 340.309 kb on - strandat 340.327 kb on - strandat 340.371 kb on - strandat 340.371 kb on - strandat 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.974 kb on + strand, within Psest_0318at 341.102 kb on + strand, within Psest_0318at 341.102 kb on + strand, within Psest_0318at 341.102 kb on + strand, within Psest_0318at 341.103 kb on - strand, within Psest_0318at 341.114 kb on - strand, within Psest_0318at 341.114 kb on - strand, within Psest_0318at 341.114 kb on - strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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338,989 + Psest_0315 0.17 -0.3
338,989 + Psest_0315 0.17 -0.7
338,990 - Psest_0315 0.17 -1.6
338,990 - Psest_0315 0.17 -1.7
338,993 + Psest_0315 0.18 +0.6
338,993 + Psest_0315 0.18 +0.3
338,993 + Psest_0315 0.18 -0.5
338,993 + Psest_0315 0.18 -0.0
338,993 + Psest_0315 0.18 -2.1
338,993 + Psest_0315 0.18 -1.1
338,993 + Psest_0315 0.18 +0.3
338,993 + Psest_0315 0.18 +1.4
338,993 + Psest_0315 0.18 +1.1
338,993 + Psest_0315 0.18 -0.9
338,993 + Psest_0315 0.18 +1.1
338,994 - Psest_0315 0.18 +0.1
338,994 - Psest_0315 0.18 +0.7
338,994 - Psest_0315 0.18 +1.2
338,994 - Psest_0315 0.18 +0.6
338,994 - Psest_0315 0.18 +0.6
338,994 - Psest_0315 0.18 +0.3
338,994 - Psest_0315 0.18 +0.8
338,994 - Psest_0315 0.18 +0.8
338,994 - Psest_0315 0.18 +0.3
338,994 - Psest_0315 0.18 +0.7
338,994 - Psest_0315 0.18 +0.5
338,994 - Psest_0315 0.18 -0.0
338,994 - Psest_0315 0.18 -1.1
338,994 - Psest_0315 0.18 +1.2
339,060 + Psest_0315 0.33 +0.4
339,060 + Psest_0315 0.33 +0.5
339,251 + Psest_0315 0.77 +1.7
339,251 + Psest_0315 0.77 -0.1
339,251 + Psest_0315 0.77 -0.0
339,252 - Psest_0315 0.77 -0.3
339,252 - Psest_0315 0.77 -0.1
339,277 + Psest_0315 0.83 -0.2
339,277 + Psest_0315 0.83 -2.2
339,277 + Psest_0315 0.83 +0.2
339,277 + Psest_0315 0.83 -0.1
339,277 + Psest_0315 0.83 +0.3
339,277 + Psest_0315 0.83 +0.1
339,278 - Psest_0315 0.83 +0.0
339,278 - Psest_0315 0.83 +0.8
339,278 - Psest_0315 0.83 +1.1
339,278 - Psest_0315 0.83 +0.2
339,278 - Psest_0315 0.83 -1.9
339,278 - Psest_0315 0.83 -0.4
339,278 - Psest_0315 0.83 -1.1
339,278 - Psest_0315 0.83 +0.2
339,278 - Psest_0315 0.83 -0.1
339,283 + Psest_0315 0.84 -0.8
339,425 - +0.0
339,503 - +1.0
339,503 - +0.8
339,561 + Psest_0316 0.23 +0.6
339,562 - Psest_0316 0.23 +0.1
339,562 - Psest_0316 0.23 -0.6
339,562 - Psest_0316 0.23 -1.4
339,916 + +0.0
339,917 - -1.4
340,032 + Psest_0317 0.31 +1.2
340,055 - Psest_0317 0.37 +0.3
340,308 + -0.1
340,308 + +1.0
340,308 + +0.5
340,308 + +0.2
340,309 - +0.2
340,309 - -2.3
340,309 - +0.5
340,327 - +0.2
340,371 - -0.3
340,371 - +0.4
340,910 + Psest_0318 0.33 -0.4
340,910 + Psest_0318 0.33 -2.0
340,910 + Psest_0318 0.33 -0.5
340,910 + Psest_0318 0.33 -0.4
340,910 + Psest_0318 0.33 -1.3
340,910 + Psest_0318 0.33 -0.8
340,910 + Psest_0318 0.33 -0.4
340,910 + Psest_0318 0.33 -1.7
340,910 + Psest_0318 0.33 -0.4
340,910 + Psest_0318 0.33 -3.0
340,910 + Psest_0318 0.33 -2.2
340,910 + Psest_0318 0.33 -0.0
340,910 + Psest_0318 0.33 +0.6
340,910 + Psest_0318 0.33 -0.0
340,910 + Psest_0318 0.33 -0.3
340,911 - Psest_0318 0.33 +0.1
340,911 - Psest_0318 0.33 +0.5
340,911 - Psest_0318 0.33 +0.4
340,911 - Psest_0318 0.33 +0.0
340,911 - Psest_0318 0.33 +0.3
340,911 - Psest_0318 0.33 +0.7
340,911 - Psest_0318 0.33 +0.1
340,911 - Psest_0318 0.33 -0.8
340,974 + Psest_0318 0.37 +0.1
341,102 + Psest_0318 0.45 -0.6
341,102 + Psest_0318 0.45 -0.6
341,102 + Psest_0318 0.45 +0.0
341,103 - Psest_0318 0.45 +0.7
341,114 - Psest_0318 0.46 -0.3
341,114 - Psest_0318 0.46 +0.2
341,114 - Psest_0318 0.46 +0.4
341,229 + Psest_0318 0.52 +0.9
341,229 + Psest_0318 0.52 -1.5
341,229 + Psest_0318 0.52 -1.5
341,229 + Psest_0318 0.52 -0.2

Or see this region's nucleotide sequence