Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0314

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0313 and Psest_0314 are separated by 86 nucleotidesPsest_0314 and Psest_0315 are separated by 288 nucleotidesPsest_0315 and Psest_0316 are separated by 107 nucleotides Psest_0313: Psest_0313 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 336,203 to 337,132 _0313 Psest_0314: Psest_0314 - adenosylhomocysteinase, at 337,219 to 338,625 _0314 Psest_0315: Psest_0315 - hypothetical protein, at 338,914 to 339,351 _0315 Psest_0316: Psest_0316 - Cytochrome c556, at 339,459 to 339,905 _0316 Position (kb) 337 338 339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 336.264 kb on + strandat 336.438 kb on + strand, within Psest_0313at 336.439 kb on - strand, within Psest_0313at 336.510 kb on + strand, within Psest_0313at 336.510 kb on + strand, within Psest_0313at 336.510 kb on + strand, within Psest_0313at 336.516 kb on + strand, within Psest_0313at 336.516 kb on + strand, within Psest_0313at 336.516 kb on + strand, within Psest_0313at 336.517 kb on - strand, within Psest_0313at 336.537 kb on + strand, within Psest_0313at 336.538 kb on - strand, within Psest_0313at 336.538 kb on - strand, within Psest_0313at 336.786 kb on + strand, within Psest_0313at 336.786 kb on + strand, within Psest_0313at 336.786 kb on + strand, within Psest_0313at 336.786 kb on + strand, within Psest_0313at 336.786 kb on + strand, within Psest_0313at 336.787 kb on - strand, within Psest_0313at 336.787 kb on - strand, within Psest_0313at 336.787 kb on - strand, within Psest_0313at 336.787 kb on - strand, within Psest_0313at 336.787 kb on - strand, within Psest_0313at 336.787 kb on - strand, within Psest_0313at 336.860 kb on + strand, within Psest_0313at 336.924 kb on + strand, within Psest_0313at 336.925 kb on - strand, within Psest_0313at 337.100 kb on + strandat 337.101 kb on - strandat 337.127 kb on + strandat 337.168 kb on - strandat 337.168 kb on - strandat 338.645 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.647 kb on - strandat 338.677 kb on - strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.797 kb on + strandat 338.798 kb on - strandat 338.798 kb on - strandat 338.798 kb on - strandat 338.798 kb on - strandat 338.798 kb on - strandat 338.798 kb on - strandat 338.798 kb on - strandat 338.840 kb on + strandat 338.840 kb on + strandat 338.840 kb on + strandat 338.840 kb on + strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.841 kb on - strandat 338.862 kb on + strandat 338.863 kb on - strandat 338.989 kb on + strand, within Psest_0315at 338.989 kb on + strand, within Psest_0315at 338.990 kb on - strand, within Psest_0315at 338.990 kb on - strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.993 kb on + strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 338.994 kb on - strand, within Psest_0315at 339.060 kb on + strand, within Psest_0315at 339.060 kb on + strand, within Psest_0315at 339.251 kb on + strand, within Psest_0315at 339.251 kb on + strand, within Psest_0315at 339.251 kb on + strand, within Psest_0315at 339.252 kb on - strand, within Psest_0315at 339.252 kb on - strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.277 kb on + strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.278 kb on - strand, within Psest_0315at 339.283 kb on + strand, within Psest_0315at 339.425 kb on - strandat 339.503 kb on - strandat 339.503 kb on - strandat 339.561 kb on + strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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336,264 + -2.3
336,438 + Psest_0313 0.25 -3.7
336,439 - Psest_0313 0.25 -1.3
336,510 + Psest_0313 0.33 -3.0
336,510 + Psest_0313 0.33 -4.6
336,510 + Psest_0313 0.33 -3.0
336,516 + Psest_0313 0.34 -2.5
336,516 + Psest_0313 0.34 -2.3
336,516 + Psest_0313 0.34 -2.7
336,517 - Psest_0313 0.34 -2.0
336,537 + Psest_0313 0.36 -3.4
336,538 - Psest_0313 0.36 -3.4
336,538 - Psest_0313 0.36 -3.1
336,786 + Psest_0313 0.63 -3.6
336,786 + Psest_0313 0.63 -2.7
336,786 + Psest_0313 0.63 -2.6
336,786 + Psest_0313 0.63 -2.2
336,786 + Psest_0313 0.63 -2.9
336,787 - Psest_0313 0.63 -2.0
336,787 - Psest_0313 0.63 -2.3
336,787 - Psest_0313 0.63 -2.1
336,787 - Psest_0313 0.63 -4.2
336,787 - Psest_0313 0.63 -1.7
336,787 - Psest_0313 0.63 -2.5
336,860 + Psest_0313 0.71 -2.0
336,924 + Psest_0313 0.78 -3.4
336,925 - Psest_0313 0.78 -2.0
337,100 + -3.8
337,101 - +1.0
337,127 + -2.1
337,168 - -0.0
337,168 - +0.2
338,645 - +0.2
338,647 - +0.4
338,647 - +0.8
338,647 - +0.3
338,647 - -0.2
338,647 - +0.4
338,647 - -0.4
338,647 - -0.0
338,647 - +0.4
338,647 - -0.1
338,647 - -0.5
338,677 - +0.9
338,797 + +0.5
338,797 + +0.2
338,797 + +0.4
338,797 + +0.3
338,797 + -1.4
338,797 + -0.2
338,797 + -1.9
338,797 + +0.3
338,798 - +0.9
338,798 - +0.9
338,798 - -0.4
338,798 - -3.2
338,798 - -0.5
338,798 - -0.5
338,798 - +0.5
338,840 + -0.7
338,840 + +1.7
338,840 + +0.3
338,840 + +0.3
338,841 - +1.2
338,841 - -1.0
338,841 - +0.4
338,841 - +1.0
338,841 - -0.4
338,841 - -0.2
338,841 - +0.5
338,841 - -0.9
338,841 - +0.3
338,841 - -1.2
338,862 + +2.4
338,863 - -0.2
338,989 + Psest_0315 0.17 -0.3
338,989 + Psest_0315 0.17 -0.7
338,990 - Psest_0315 0.17 -1.6
338,990 - Psest_0315 0.17 -1.7
338,993 + Psest_0315 0.18 +0.6
338,993 + Psest_0315 0.18 +0.3
338,993 + Psest_0315 0.18 -0.5
338,993 + Psest_0315 0.18 -0.0
338,993 + Psest_0315 0.18 -2.1
338,993 + Psest_0315 0.18 -1.1
338,993 + Psest_0315 0.18 +0.3
338,993 + Psest_0315 0.18 +1.4
338,993 + Psest_0315 0.18 +1.1
338,993 + Psest_0315 0.18 -0.9
338,993 + Psest_0315 0.18 +1.1
338,994 - Psest_0315 0.18 +0.1
338,994 - Psest_0315 0.18 +0.7
338,994 - Psest_0315 0.18 +1.2
338,994 - Psest_0315 0.18 +0.6
338,994 - Psest_0315 0.18 +0.6
338,994 - Psest_0315 0.18 +0.3
338,994 - Psest_0315 0.18 +0.8
338,994 - Psest_0315 0.18 +0.8
338,994 - Psest_0315 0.18 +0.3
338,994 - Psest_0315 0.18 +0.7
338,994 - Psest_0315 0.18 +0.5
338,994 - Psest_0315 0.18 -0.0
338,994 - Psest_0315 0.18 -1.1
338,994 - Psest_0315 0.18 +1.2
339,060 + Psest_0315 0.33 +0.4
339,060 + Psest_0315 0.33 +0.5
339,251 + Psest_0315 0.77 +1.7
339,251 + Psest_0315 0.77 -0.1
339,251 + Psest_0315 0.77 -0.0
339,252 - Psest_0315 0.77 -0.3
339,252 - Psest_0315 0.77 -0.1
339,277 + Psest_0315 0.83 -0.2
339,277 + Psest_0315 0.83 -2.2
339,277 + Psest_0315 0.83 +0.2
339,277 + Psest_0315 0.83 -0.1
339,277 + Psest_0315 0.83 +0.3
339,277 + Psest_0315 0.83 +0.1
339,278 - Psest_0315 0.83 +0.0
339,278 - Psest_0315 0.83 +0.8
339,278 - Psest_0315 0.83 +1.1
339,278 - Psest_0315 0.83 +0.2
339,278 - Psest_0315 0.83 -1.9
339,278 - Psest_0315 0.83 -0.4
339,278 - Psest_0315 0.83 -1.1
339,278 - Psest_0315 0.83 +0.2
339,278 - Psest_0315 0.83 -0.1
339,283 + Psest_0315 0.84 -0.8
339,425 - +0.0
339,503 - +1.0
339,503 - +0.8
339,561 + Psest_0316 0.23 +0.6
339,562 - Psest_0316 0.23 +0.1
339,562 - Psest_0316 0.23 -0.6
339,562 - Psest_0316 0.23 -1.4

Or see this region's nucleotide sequence