Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2818

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2817 and Psest_2818 are separated by 137 nucleotidesPsest_2818 and Psest_2819 are separated by 76 nucleotides Psest_2817: Psest_2817 - Transcriptional regulator, at 3,005,317 to 3,006,216 _2817 Psest_2818: Psest_2818 - Ribosome-associated protein Y (PSrp-1), at 3,006,354 to 3,006,668 _2818 Psest_2819: Psest_2819 - hypothetical protein, at 3,006,745 to 3,007,911 _2819 Position (kb) 3006 3007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3005.534 kb on + strand, within Psest_2817at 3005.535 kb on - strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.827 kb on + strand, within Psest_2817at 3005.827 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3006.029 kb on - strand, within Psest_2817at 3006.029 kb on - strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.032 kb on - strand, within Psest_2817at 3006.032 kb on - strand, within Psest_2817at 3006.032 kb on - strand, within Psest_2817at 3006.196 kb on + strandat 3006.196 kb on + strandat 3006.196 kb on + strandat 3006.197 kb on - strandat 3006.282 kb on + strandat 3006.283 kb on - strandat 3006.291 kb on + strandat 3006.291 kb on + strandat 3006.291 kb on + strandat 3006.291 kb on + strandat 3006.291 kb on + strandat 3006.291 kb on + strandat 3006.292 kb on - strandat 3006.292 kb on - strandat 3006.292 kb on - strandat 3006.730 kb on + strandat 3006.731 kb on - strandat 3006.731 kb on - strandat 3006.818 kb on - strandat 3006.953 kb on - strand, within Psest_2819at 3007.024 kb on + strand, within Psest_2819at 3007.075 kb on - strand, within Psest_2819at 3007.199 kb on + strand, within Psest_2819at 3007.199 kb on + strand, within Psest_2819at 3007.199 kb on + strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.255 kb on - strand, within Psest_2819at 3007.288 kb on + strand, within Psest_2819at 3007.325 kb on + strand, within Psest_2819at 3007.326 kb on - strand, within Psest_2819at 3007.503 kb on - strand, within Psest_2819

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,005,534 + Psest_2817 0.24 +0.0
3,005,535 - Psest_2817 0.24 +1.1
3,005,806 + Psest_2817 0.54 -0.3
3,005,806 + Psest_2817 0.54 -0.6
3,005,806 + Psest_2817 0.54 +1.3
3,005,806 + Psest_2817 0.54 +0.9
3,005,806 + Psest_2817 0.54 -0.2
3,005,806 + Psest_2817 0.54 -1.2
3,005,807 - Psest_2817 0.54 -1.7
3,005,807 - Psest_2817 0.54 -1.4
3,005,807 - Psest_2817 0.54 -0.1
3,005,807 - Psest_2817 0.54 +0.5
3,005,807 - Psest_2817 0.54 -1.6
3,005,807 - Psest_2817 0.54 +1.0
3,005,807 - Psest_2817 0.54 -0.8
3,005,807 - Psest_2817 0.54 -0.1
3,005,807 - Psest_2817 0.54 +0.0
3,005,827 + Psest_2817 0.57 +0.0
3,005,827 + Psest_2817 0.57 +0.2
3,005,853 + Psest_2817 0.60 +0.6
3,005,853 + Psest_2817 0.60 -1.0
3,005,853 + Psest_2817 0.60 -0.2
3,005,853 + Psest_2817 0.60 -0.4
3,005,853 + Psest_2817 0.60 -0.3
3,005,853 + Psest_2817 0.60 -0.3
3,005,853 + Psest_2817 0.60 +1.2
3,005,853 + Psest_2817 0.60 +0.1
3,005,853 + Psest_2817 0.60 +0.3
3,005,853 + Psest_2817 0.60 -0.0
3,005,853 + Psest_2817 0.60 -0.0
3,005,853 + Psest_2817 0.60 +0.3
3,005,853 + Psest_2817 0.60 -1.0
3,005,853 + Psest_2817 0.60 -0.0
3,005,853 + Psest_2817 0.60 +0.8
3,005,853 + Psest_2817 0.60 +1.0
3,005,853 + Psest_2817 0.60 -0.5
3,005,854 - Psest_2817 0.60 +0.0
3,005,854 - Psest_2817 0.60 -1.5
3,005,854 - Psest_2817 0.60 +0.1
3,005,854 - Psest_2817 0.60 -0.3
3,005,854 - Psest_2817 0.60 +0.0
3,005,854 - Psest_2817 0.60 -3.8
3,005,854 - Psest_2817 0.60 -1.5
3,005,854 - Psest_2817 0.60 +0.4
3,005,854 - Psest_2817 0.60 -0.5
3,005,854 - Psest_2817 0.60 -0.4
3,005,854 - Psest_2817 0.60 +0.3
3,005,854 - Psest_2817 0.60 -0.1
3,005,854 - Psest_2817 0.60 +0.8
3,005,854 - Psest_2817 0.60 -0.5
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 +0.5
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 +0.1
3,005,854 - Psest_2817 0.60 +0.2
3,005,854 - Psest_2817 0.60 +0.9
3,005,854 - Psest_2817 0.60 -0.8
3,005,854 - Psest_2817 0.60 +0.9
3,005,854 - Psest_2817 0.60 +0.6
3,005,854 - Psest_2817 0.60 +1.2
3,005,854 - Psest_2817 0.60 +0.7
3,005,854 - Psest_2817 0.60 +0.2
3,005,854 - Psest_2817 0.60 -0.9
3,005,854 - Psest_2817 0.60 +1.1
3,005,854 - Psest_2817 0.60 -0.0
3,005,854 - Psest_2817 0.60 -0.0
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 +0.0
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 -1.1
3,005,854 - Psest_2817 0.60 -0.6
3,005,854 - Psest_2817 0.60 +1.0
3,006,029 - Psest_2817 0.79 -0.4
3,006,029 - Psest_2817 0.79 -0.2
3,006,031 + Psest_2817 0.79 +1.7
3,006,031 + Psest_2817 0.79 +1.1
3,006,031 + Psest_2817 0.79 -0.2
3,006,031 + Psest_2817 0.79 +1.5
3,006,032 - Psest_2817 0.79 -0.3
3,006,032 - Psest_2817 0.79 -0.1
3,006,032 - Psest_2817 0.79 +0.5
3,006,196 + -0.7
3,006,196 + -0.2
3,006,196 + -0.4
3,006,197 - -0.2
3,006,282 + +0.8
3,006,283 - +1.1
3,006,291 + -0.4
3,006,291 + +0.3
3,006,291 + +0.1
3,006,291 + -0.2
3,006,291 + -0.1
3,006,291 + -0.3
3,006,292 - +0.7
3,006,292 - +0.4
3,006,292 - -0.2
3,006,730 + +2.1
3,006,731 - +0.9
3,006,731 - +1.6
3,006,818 - -3.6
3,006,953 - Psest_2819 0.18 -0.5
3,007,024 + Psest_2819 0.24 +0.7
3,007,075 - Psest_2819 0.28 -0.8
3,007,199 + Psest_2819 0.39 +0.4
3,007,199 + Psest_2819 0.39 +0.1
3,007,199 + Psest_2819 0.39 +0.4
3,007,200 - Psest_2819 0.39 -0.1
3,007,200 - Psest_2819 0.39 +0.2
3,007,200 - Psest_2819 0.39 +0.1
3,007,200 - Psest_2819 0.39 -0.1
3,007,200 - Psest_2819 0.39 +0.6
3,007,200 - Psest_2819 0.39 -0.5
3,007,200 - Psest_2819 0.39 +0.2
3,007,255 - Psest_2819 0.44 +0.7
3,007,288 + Psest_2819 0.47 +1.5
3,007,325 + Psest_2819 0.50 +0.1
3,007,326 - Psest_2819 0.50 -0.2
3,007,503 - Psest_2819 0.65 -1.9

Or see this region's nucleotide sequence