Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2779 and Psest_2780 are separated by 297 nucleotides Psest_2780 and Psest_2781 are separated by 92 nucleotides Psest_2781 and Psest_2782 are separated by 53 nucleotides
Psest_2779: Psest_2779 - Methyl-accepting chemotaxis protein, at 2,974,847 to 2,976,442
_2779
Psest_2780: Psest_2780 - Protein of unknown function (DUF3478)., at 2,976,740 to 2,977,108
_2780
Psest_2781: Psest_2781 - Domain of unknown function (DUF3597)., at 2,977,201 to 2,977,662
_2781
Psest_2782: Psest_2782 - Sigma 54 modulation protein / S30EA ribosomal protein., at 2,977,716 to 2,978,129
_2782
Position (kb)
2976
2977
2978 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2975.986 kb on + strand, within Psest_2779 at 2976.281 kb on - strand, within Psest_2779 at 2976.357 kb on + strand at 2976.358 kb on - strand at 2976.404 kb on + strand at 2976.483 kb on + strand at 2976.876 kb on - strand, within Psest_2780 at 2977.135 kb on + strand at 2977.135 kb on + strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.172 kb on + strand at 2977.661 kb on - strand at 2977.661 kb on - strand at 2977.672 kb on + strand at 2977.672 kb on + strand at 2977.717 kb on + strand at 2977.718 kb on - strand at 2977.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,975,986 + Psest_2779 0.71 -0.5 2,976,281 - Psest_2779 0.90 +0.7 2,976,357 + -3.2 2,976,358 - +1.0 2,976,404 + -0.2 2,976,483 + -1.8 2,976,876 - Psest_2780 0.37 -0.3 2,977,135 + -0.7 2,977,135 + +0.0 2,977,136 - -0.1 2,977,136 - -0.4 2,977,136 - +1.8 2,977,136 - +0.1 2,977,172 + +0.2 2,977,661 - -0.5 2,977,661 - -0.0 2,977,672 + +1.0 2,977,672 + -0.9 2,977,717 + +0.3 2,977,718 - -0.9 2,977,718 - +1.3
Or see this region's nucleotide sequence