Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2780

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2779 and Psest_2780 are separated by 297 nucleotidesPsest_2780 and Psest_2781 are separated by 92 nucleotidesPsest_2781 and Psest_2782 are separated by 53 nucleotides Psest_2779: Psest_2779 - Methyl-accepting chemotaxis protein, at 2,974,847 to 2,976,442 _2779 Psest_2780: Psest_2780 - Protein of unknown function (DUF3478)., at 2,976,740 to 2,977,108 _2780 Psest_2781: Psest_2781 - Domain of unknown function (DUF3597)., at 2,977,201 to 2,977,662 _2781 Psest_2782: Psest_2782 - Sigma 54 modulation protein / S30EA ribosomal protein., at 2,977,716 to 2,978,129 _2782 Position (kb) 2976 2977 2978Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2975.986 kb on + strand, within Psest_2779at 2976.281 kb on - strand, within Psest_2779at 2976.357 kb on + strandat 2976.358 kb on - strandat 2976.404 kb on + strandat 2976.483 kb on + strandat 2976.876 kb on - strand, within Psest_2780at 2977.135 kb on + strandat 2977.135 kb on + strandat 2977.136 kb on - strandat 2977.136 kb on - strandat 2977.136 kb on - strandat 2977.136 kb on - strandat 2977.172 kb on + strandat 2977.661 kb on - strandat 2977.661 kb on - strandat 2977.672 kb on + strandat 2977.672 kb on + strandat 2977.717 kb on + strandat 2977.718 kb on - strandat 2977.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,975,986 + Psest_2779 0.71 -0.5
2,976,281 - Psest_2779 0.90 +0.7
2,976,357 + -3.2
2,976,358 - +1.0
2,976,404 + -0.2
2,976,483 + -1.8
2,976,876 - Psest_2780 0.37 -0.3
2,977,135 + -0.7
2,977,135 + +0.0
2,977,136 - -0.1
2,977,136 - -0.4
2,977,136 - +1.8
2,977,136 - +0.1
2,977,172 + +0.2
2,977,661 - -0.5
2,977,661 - -0.0
2,977,672 + +1.0
2,977,672 + -0.9
2,977,717 + +0.3
2,977,718 - -0.9
2,977,718 - +1.3

Or see this region's nucleotide sequence