Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0254 and Psest_0255 are separated by 11 nucleotides Psest_0255 and Psest_0256 overlap by 1 nucleotides Psest_0256 and Psest_0257 overlap by 8 nucleotides
Psest_0254: Psest_0254 - hypothetical protein, at 268,433 to 268,837
_0254
Psest_0255: Psest_0255 - RNA methyltransferase, RsmD family, at 268,849 to 269,463
_0255
Psest_0256: Psest_0256 - Predicted Zn-dependent peptidases, at 269,463 to 271,004
_0256
Psest_0257: Psest_0257 - Predicted Zn-dependent peptidases, at 270,997 to 272,349
_0257
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 268.783 kb on + strand, within Psest_0254 at 268.833 kb on - strand at 268.982 kb on + strand, within Psest_0255 at 269.300 kb on + strand, within Psest_0255 at 269.648 kb on - strand, within Psest_0256 at 269.648 kb on - strand, within Psest_0256 at 269.900 kb on - strand, within Psest_0256 at 271.024 kb on + strand at 271.024 kb on + strand at 271.024 kb on + strand at 271.024 kb on + strand at 271.024 kb on + strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.025 kb on - strand at 271.058 kb on + strand at 271.059 kb on - strand at 271.276 kb on + strand, within Psest_0257 at 271.731 kb on - strand, within Psest_0257 at 271.850 kb on + strand, within Psest_0257
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 268,783 + Psest_0254 0.86 -1.1 268,833 - -2.9 268,982 + Psest_0255 0.22 +0.9 269,300 + Psest_0255 0.73 +1.9 269,648 - Psest_0256 0.12 -0.3 269,648 - Psest_0256 0.12 -0.8 269,900 - Psest_0256 0.28 +1.7 271,024 + +0.0 271,024 + +0.7 271,024 + -0.3 271,024 + +0.7 271,024 + -1.6 271,025 - -0.6 271,025 - -0.1 271,025 - +0.3 271,025 - +0.2 271,025 - +0.3 271,025 - +0.4 271,025 - +0.3 271,025 - +1.3 271,058 + -0.1 271,059 - -0.1 271,276 + Psest_0257 0.21 +0.1 271,731 - Psest_0257 0.54 +0.1 271,850 + Psest_0257 0.63 -0.3
Or see this region's nucleotide sequence