Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0254

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0253 and Psest_0254 are separated by 173 nucleotidesPsest_0254 and Psest_0255 are separated by 11 nucleotidesPsest_0255 and Psest_0256 overlap by 1 nucleotides Psest_0253: Psest_0253 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 267,273 to 268,259 _0253 Psest_0254: Psest_0254 - hypothetical protein, at 268,433 to 268,837 _0254 Psest_0255: Psest_0255 - RNA methyltransferase, RsmD family, at 268,849 to 269,463 _0255 Psest_0256: Psest_0256 - Predicted Zn-dependent peptidases, at 269,463 to 271,004 _0256 Position (kb) 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 267.435 kb on + strand, within Psest_0253at 267.493 kb on + strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.520 kb on + strand, within Psest_0253at 267.520 kb on + strand, within Psest_0253at 267.538 kb on + strand, within Psest_0253at 267.584 kb on + strand, within Psest_0253at 267.584 kb on + strand, within Psest_0253at 267.585 kb on - strand, within Psest_0253at 267.585 kb on - strand, within Psest_0253at 267.585 kb on - strand, within Psest_0253at 267.676 kb on + strand, within Psest_0253at 267.676 kb on + strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.709 kb on + strand, within Psest_0253at 267.709 kb on + strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.820 kb on + strand, within Psest_0253at 267.820 kb on + strand, within Psest_0253at 267.821 kb on - strand, within Psest_0253at 267.821 kb on - strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.843 kb on + strand, within Psest_0253at 267.862 kb on + strand, within Psest_0253at 267.862 kb on + strand, within Psest_0253at 267.863 kb on - strand, within Psest_0253at 268.040 kb on - strand, within Psest_0253at 268.040 kb on - strand, within Psest_0253at 268.040 kb on - strand, within Psest_0253at 268.204 kb on - strandat 268.358 kb on + strandat 268.358 kb on + strandat 268.358 kb on + strandat 268.358 kb on + strandat 268.358 kb on + strandat 268.358 kb on + strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.367 kb on - strandat 268.372 kb on + strandat 268.372 kb on + strandat 268.388 kb on + strandat 268.388 kb on + strandat 268.388 kb on + strandat 268.783 kb on + strand, within Psest_0254at 268.833 kb on - strandat 268.982 kb on + strand, within Psest_0255at 269.300 kb on + strand, within Psest_0255at 269.648 kb on - strand, within Psest_0256at 269.648 kb on - strand, within Psest_0256

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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267,435 + Psest_0253 0.16 +1.1
267,493 + Psest_0253 0.22 -0.4
267,494 - Psest_0253 0.22 -0.3
267,494 - Psest_0253 0.22 +0.5
267,494 - Psest_0253 0.22 +0.1
267,494 - Psest_0253 0.22 +1.2
267,520 + Psest_0253 0.25 -0.4
267,520 + Psest_0253 0.25 +0.7
267,538 + Psest_0253 0.27 +0.4
267,584 + Psest_0253 0.32 +1.1
267,584 + Psest_0253 0.32 -0.0
267,585 - Psest_0253 0.32 +1.8
267,585 - Psest_0253 0.32 -0.0
267,585 - Psest_0253 0.32 +0.1
267,676 + Psest_0253 0.41 +0.3
267,676 + Psest_0253 0.41 +0.7
267,677 - Psest_0253 0.41 +1.7
267,677 - Psest_0253 0.41 +1.3
267,677 - Psest_0253 0.41 +0.2
267,677 - Psest_0253 0.41 -0.4
267,677 - Psest_0253 0.41 +1.0
267,709 + Psest_0253 0.44 -0.8
267,709 + Psest_0253 0.44 -0.3
267,710 - Psest_0253 0.44 +0.3
267,710 - Psest_0253 0.44 +0.4
267,710 - Psest_0253 0.44 -0.1
267,710 - Psest_0253 0.44 +1.3
267,710 - Psest_0253 0.44 -0.3
267,710 - Psest_0253 0.44 +1.0
267,820 + Psest_0253 0.55 -0.4
267,820 + Psest_0253 0.55 -1.9
267,821 - Psest_0253 0.56 +0.6
267,821 - Psest_0253 0.56 +0.2
267,831 + Psest_0253 0.57 +0.0
267,831 + Psest_0253 0.57 +0.0
267,831 + Psest_0253 0.57 -0.1
267,831 + Psest_0253 0.57 -0.3
267,831 + Psest_0253 0.57 +0.8
267,832 - Psest_0253 0.57 -0.1
267,832 - Psest_0253 0.57 +0.3
267,832 - Psest_0253 0.57 -1.4
267,832 - Psest_0253 0.57 +0.4
267,832 - Psest_0253 0.57 +0.4
267,832 - Psest_0253 0.57 +0.3
267,832 - Psest_0253 0.57 -0.0
267,843 + Psest_0253 0.58 -1.5
267,862 + Psest_0253 0.60 +1.7
267,862 + Psest_0253 0.60 -0.3
267,863 - Psest_0253 0.60 +0.5
268,040 - Psest_0253 0.78 +1.2
268,040 - Psest_0253 0.78 -0.3
268,040 - Psest_0253 0.78 -0.1
268,204 - -2.4
268,358 + +0.4
268,358 + +0.3
268,358 + +0.7
268,358 + -0.9
268,358 + +1.2
268,358 + +0.8
268,359 - -0.3
268,359 - -0.2
268,359 - -0.5
268,359 - -1.0
268,359 - +1.1
268,359 - -0.0
268,359 - -0.3
268,359 - -1.6
268,367 - -3.6
268,372 + -2.3
268,372 + +1.4
268,388 + -0.6
268,388 + -0.8
268,388 + +0.2
268,783 + Psest_0254 0.86 -1.1
268,833 - -2.9
268,982 + Psest_0255 0.22 +0.9
269,300 + Psest_0255 0.73 +1.9
269,648 - Psest_0256 0.12 -0.3
269,648 - Psest_0256 0.12 -0.8

Or see this region's nucleotide sequence