Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0246

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0245 and Psest_0246 are separated by 15 nucleotidesPsest_0246 and Psest_0247 are separated by 14 nucleotides Psest_0245: Psest_0245 - Choline dehydrogenase and related flavoproteins, at 255,560 to 257,155 _0245 Psest_0246: Psest_0246 - hypothetical protein, at 257,171 to 257,701 _0246 Psest_0247: Psest_0247 - NAD-dependent aldehyde dehydrogenases, at 257,716 to 259,128 _0247 Position (kb) 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 256.201 kb on - strand, within Psest_0245at 256.201 kb on - strand, within Psest_0245at 256.274 kb on + strand, within Psest_0245at 256.274 kb on + strand, within Psest_0245at 256.275 kb on - strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.369 kb on - strand, within Psest_0245at 256.369 kb on - strand, within Psest_0245at 256.369 kb on - strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.492 kb on - strand, within Psest_0245at 256.492 kb on - strand, within Psest_0245at 256.658 kb on + strand, within Psest_0245at 256.658 kb on + strand, within Psest_0245at 256.658 kb on + strand, within Psest_0245at 256.659 kb on - strand, within Psest_0245at 256.661 kb on + strand, within Psest_0245at 256.981 kb on + strand, within Psest_0245at 256.995 kb on + strand, within Psest_0245at 257.735 kb on + strandat 257.735 kb on + strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.762 kb on + strandat 257.772 kb on - strandat 257.996 kb on + strand, within Psest_0247at 257.996 kb on + strand, within Psest_0247at 257.997 kb on - strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.033 kb on - strand, within Psest_0247at 258.060 kb on - strand, within Psest_0247at 258.215 kb on + strand, within Psest_0247at 258.215 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.605 kb on - strand, within Psest_0247at 258.631 kb on + strand, within Psest_0247at 258.631 kb on + strand, within Psest_0247at 258.632 kb on - strand, within Psest_0247at 258.632 kb on - strand, within Psest_0247

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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256,201 - Psest_0245 0.40 -0.1
256,201 - Psest_0245 0.40 +0.6
256,274 + Psest_0245 0.45 -1.5
256,274 + Psest_0245 0.45 +0.3
256,275 - Psest_0245 0.45 -2.2
256,368 + Psest_0245 0.51 +0.7
256,368 + Psest_0245 0.51 +0.8
256,368 + Psest_0245 0.51 -0.5
256,368 + Psest_0245 0.51 -0.8
256,368 + Psest_0245 0.51 +0.7
256,369 - Psest_0245 0.51 -0.4
256,369 - Psest_0245 0.51 +1.2
256,369 - Psest_0245 0.51 -0.5
256,491 + Psest_0245 0.58 +1.4
256,491 + Psest_0245 0.58 -1.3
256,491 + Psest_0245 0.58 -0.1
256,491 + Psest_0245 0.58 +0.3
256,492 - Psest_0245 0.58 -0.3
256,492 - Psest_0245 0.58 +0.2
256,658 + Psest_0245 0.69 -0.1
256,658 + Psest_0245 0.69 -1.4
256,658 + Psest_0245 0.69 -0.4
256,659 - Psest_0245 0.69 +0.2
256,661 + Psest_0245 0.69 +0.4
256,981 + Psest_0245 0.89 +0.9
256,995 + Psest_0245 0.90 -0.3
257,735 + -1.8
257,735 + +0.7
257,736 - +0.2
257,736 - +0.1
257,736 - +0.6
257,736 - -0.3
257,736 - +1.4
257,736 - -0.1
257,736 - +0.5
257,736 - -0.7
257,762 + -0.1
257,772 - +0.8
257,996 + Psest_0247 0.20 +2.1
257,996 + Psest_0247 0.20 +0.4
257,997 - Psest_0247 0.20 +0.5
257,999 + Psest_0247 0.20 +1.1
257,999 + Psest_0247 0.20 -0.7
257,999 + Psest_0247 0.20 +0.1
257,999 + Psest_0247 0.20 -0.4
258,000 - Psest_0247 0.20 -1.1
258,000 - Psest_0247 0.20 +0.4
258,000 - Psest_0247 0.20 -1.8
258,000 - Psest_0247 0.20 +1.2
258,032 + Psest_0247 0.22 -0.1
258,032 + Psest_0247 0.22 +0.4
258,032 + Psest_0247 0.22 -0.1
258,032 + Psest_0247 0.22 +0.0
258,033 - Psest_0247 0.22 +0.4
258,060 - Psest_0247 0.24 -1.4
258,215 + Psest_0247 0.35 +0.4
258,215 + Psest_0247 0.35 +0.1
258,356 + Psest_0247 0.45 +0.4
258,356 + Psest_0247 0.45 -0.2
258,356 + Psest_0247 0.45 -0.8
258,356 + Psest_0247 0.45 +0.6
258,356 + Psest_0247 0.45 +0.1
258,356 + Psest_0247 0.45 +0.5
258,356 + Psest_0247 0.45 +0.1
258,356 + Psest_0247 0.45 +0.7
258,356 + Psest_0247 0.45 -0.4
258,356 + Psest_0247 0.45 +0.1
258,356 + Psest_0247 0.45 -0.1
258,356 + Psest_0247 0.45 +0.9
258,356 + Psest_0247 0.45 -0.1
258,356 + Psest_0247 0.45 +0.6
258,357 - Psest_0247 0.45 +0.2
258,357 - Psest_0247 0.45 +0.5
258,357 - Psest_0247 0.45 +0.1
258,357 - Psest_0247 0.45 +0.6
258,357 - Psest_0247 0.45 -2.2
258,357 - Psest_0247 0.45 -1.4
258,357 - Psest_0247 0.45 +0.7
258,592 + Psest_0247 0.62 -0.9
258,592 + Psest_0247 0.62 -0.4
258,592 + Psest_0247 0.62 -2.0
258,592 + Psest_0247 0.62 -0.3
258,592 + Psest_0247 0.62 -0.2
258,592 + Psest_0247 0.62 -0.5
258,592 + Psest_0247 0.62 -0.4
258,593 - Psest_0247 0.62 +0.6
258,593 - Psest_0247 0.62 +0.1
258,593 - Psest_0247 0.62 -0.1
258,593 - Psest_0247 0.62 +0.6
258,593 - Psest_0247 0.62 +2.5
258,593 - Psest_0247 0.62 -0.2
258,593 - Psest_0247 0.62 -0.3
258,593 - Psest_0247 0.62 -0.6
258,605 - Psest_0247 0.63 +0.5
258,631 + Psest_0247 0.65 +1.5
258,631 + Psest_0247 0.65 +1.5
258,632 - Psest_0247 0.65 -2.0
258,632 - Psest_0247 0.65 +1.1

Or see this region's nucleotide sequence