Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2492

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2491 and Psest_2492 are separated by 194 nucleotidesPsest_2492 and Psest_2493 are separated by 95 nucleotides Psest_2491: Psest_2491 - succinyl-CoA synthetase, beta subunit, at 2,664,094 to 2,665,260 _2491 Psest_2492: Psest_2492 - dihydrolipoamide dehydrogenase, at 2,665,455 to 2,666,891 _2492 Psest_2493: Psest_2493 - 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component), at 2,666,987 to 2,668,207 _2493 Position (kb) 2665 2666 2667Strain fitness (log2 ratio) -1 0 1 2at 2664.506 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.591 kb on - strand, within Psest_2491at 2664.689 kb on + strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.935 kb on + strand, within Psest_2491at 2665.082 kb on - strand, within Psest_2491at 2665.200 kb on + strandat 2665.236 kb on + strandat 2665.267 kb on + strandat 2665.295 kb on - strandat 2665.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,664,506 + Psest_2491 0.35 +0.0
2,664,506 + Psest_2491 0.35 +0.8
2,664,506 + Psest_2491 0.35 +1.5
2,664,507 - Psest_2491 0.35 -1.4
2,664,507 - Psest_2491 0.35 +0.2
2,664,507 - Psest_2491 0.35 +0.5
2,664,507 - Psest_2491 0.35 +1.7
2,664,507 - Psest_2491 0.35 +0.1
2,664,591 - Psest_2491 0.43 -0.7
2,664,689 + Psest_2491 0.51 +0.8
2,664,690 - Psest_2491 0.51 +0.9
2,664,690 - Psest_2491 0.51 +0.9
2,664,690 - Psest_2491 0.51 +1.4
2,664,690 - Psest_2491 0.51 +1.7
2,664,935 + Psest_2491 0.72 +1.8
2,665,082 - Psest_2491 0.85 +0.6
2,665,200 + +0.5
2,665,236 + +0.6
2,665,267 + +1.5
2,665,295 - -0.6
2,665,358 - +1.7

Or see this region's nucleotide sequence