Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2393

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2392 and Psest_2393 are separated by 36 nucleotidesPsest_2393 and Psest_2394 are separated by 79 nucleotides Psest_2392: Psest_2392 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,543,054 to 2,545,714 _2392 Psest_2393: Psest_2393 - ferrochelatase, at 2,545,751 to 2,546,776 _2393 Psest_2394: Psest_2394 - TIGR01777 family protein, at 2,546,856 to 2,547,758 _2394 Position (kb) 2545 2546 2547Strain fitness (log2 ratio) -1 0 1at 2544.811 kb on + strand, within Psest_2392at 2544.811 kb on + strand, within Psest_2392at 2544.851 kb on + strand, within Psest_2392at 2544.852 kb on - strand, within Psest_2392at 2544.852 kb on - strand, within Psest_2392at 2544.852 kb on - strand, within Psest_2392at 2544.852 kb on - strand, within Psest_2392at 2544.852 kb on - strand, within Psest_2392at 2545.132 kb on - strand, within Psest_2392at 2545.132 kb on - strand, within Psest_2392at 2545.132 kb on - strand, within Psest_2392at 2545.243 kb on - strand, within Psest_2392at 2545.330 kb on + strand, within Psest_2392at 2545.330 kb on + strand, within Psest_2392at 2545.330 kb on + strand, within Psest_2392at 2545.331 kb on - strand, within Psest_2392at 2545.425 kb on - strand, within Psest_2392at 2545.629 kb on - strandat 2547.097 kb on + strand, within Psest_2394at 2547.098 kb on - strand, within Psest_2394at 2547.098 kb on - strand, within Psest_2394at 2547.409 kb on + strand, within Psest_2394at 2547.639 kb on + strand, within Psest_2394at 2547.639 kb on + strand, within Psest_2394at 2547.639 kb on + strand, within Psest_2394at 2547.639 kb on + strand, within Psest_2394at 2547.640 kb on - strand, within Psest_2394at 2547.640 kb on - strand, within Psest_2394at 2547.640 kb on - strand, within Psest_2394at 2547.640 kb on - strand, within Psest_2394at 2547.640 kb on - strand, within Psest_2394at 2547.711 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,544,811 + Psest_2392 0.66 +0.3
2,544,811 + Psest_2392 0.66 +1.2
2,544,851 + Psest_2392 0.68 -0.3
2,544,852 - Psest_2392 0.68 +0.3
2,544,852 - Psest_2392 0.68 -1.1
2,544,852 - Psest_2392 0.68 +1.0
2,544,852 - Psest_2392 0.68 +0.8
2,544,852 - Psest_2392 0.68 +0.0
2,545,132 - Psest_2392 0.78 +0.1
2,545,132 - Psest_2392 0.78 +0.1
2,545,132 - Psest_2392 0.78 +0.1
2,545,243 - Psest_2392 0.82 +0.6
2,545,330 + Psest_2392 0.86 +0.1
2,545,330 + Psest_2392 0.86 -0.5
2,545,330 + Psest_2392 0.86 +0.4
2,545,331 - Psest_2392 0.86 +0.0
2,545,425 - Psest_2392 0.89 +1.0
2,545,629 - -0.6
2,547,097 + Psest_2394 0.27 +0.9
2,547,098 - Psest_2394 0.27 -0.7
2,547,098 - Psest_2394 0.27 -1.0
2,547,409 + Psest_2394 0.61 -0.5
2,547,639 + Psest_2394 0.87 +0.1
2,547,639 + Psest_2394 0.87 -0.3
2,547,639 + Psest_2394 0.87 +0.3
2,547,639 + Psest_2394 0.87 +0.2
2,547,640 - Psest_2394 0.87 +0.7
2,547,640 - Psest_2394 0.87 -1.4
2,547,640 - Psest_2394 0.87 +0.5
2,547,640 - Psest_2394 0.87 -0.8
2,547,640 - Psest_2394 0.87 +0.6
2,547,711 + -0.2

Or see this region's nucleotide sequence