Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2374

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2372 and Psest_2373 are separated by 90 nucleotidesPsest_2373 and Psest_2374 overlap by 1 nucleotidesPsest_2374 and Psest_2375 overlap by 1 nucleotidesPsest_2375 and Psest_2376 overlap by 4 nucleotidesPsest_2376 and Psest_2377 overlap by 4 nucleotides Psest_2372: Psest_2372 - Integral membrane protein, interacts with FtsH, at 2,524,757 to 2,525,425 _2372 Psest_2373: Psest_2373 - sulfur relay protein TusD/DsrE, at 2,525,516 to 2,525,908 _2373 Psest_2374: Psest_2374 - sulfur relay protein TusC/DsrF, at 2,525,908 to 2,526,267 _2374 Psest_2375: Psest_2375 - sulfur relay protein TusB/DsrH, at 2,526,267 to 2,526,569 _2375 Psest_2376: Psest_2376 - sulfur relay protein, TusE/DsrC/DsvC family, at 2,526,566 to 2,526,898 _2376 Psest_2377: Psest_2377 - Anthranilate phosphoribosyltransferase, at 2,526,895 to 2,527,878 _2377 Position (kb) 2525 2526 2527Strain fitness (log2 ratio) -2 -1 0 1at 2524.937 kb on + strand, within Psest_2372at 2524.938 kb on - strand, within Psest_2372at 2525.044 kb on + strand, within Psest_2372at 2525.044 kb on + strand, within Psest_2372at 2525.044 kb on + strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.049 kb on - strand, within Psest_2372at 2525.049 kb on - strand, within Psest_2372at 2525.049 kb on - strand, within Psest_2372at 2525.129 kb on + strand, within Psest_2372at 2525.129 kb on + strand, within Psest_2372at 2525.129 kb on + strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.330 kb on - strand, within Psest_2372at 2525.330 kb on - strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.334 kb on - strand, within Psest_2372at 2525.334 kb on - strand, within Psest_2372at 2525.369 kb on + strandat 2525.370 kb on - strandat 2525.484 kb on + strandat 2527.009 kb on - strand, within Psest_2377at 2527.169 kb on - strand, within Psest_2377at 2527.199 kb on - strand, within Psest_2377at 2527.199 kb on - strand, within Psest_2377

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,524,937 + Psest_2372 0.27 +1.4
2,524,938 - Psest_2372 0.27 -0.2
2,525,044 + Psest_2372 0.43 -1.3
2,525,044 + Psest_2372 0.43 -1.0
2,525,044 + Psest_2372 0.43 -0.3
2,525,045 - Psest_2372 0.43 +0.8
2,525,045 - Psest_2372 0.43 +0.0
2,525,045 - Psest_2372 0.43 +0.1
2,525,045 - Psest_2372 0.43 -1.2
2,525,045 - Psest_2372 0.43 -1.2
2,525,045 - Psest_2372 0.43 +1.4
2,525,048 + Psest_2372 0.43 -0.4
2,525,048 + Psest_2372 0.43 -0.6
2,525,048 + Psest_2372 0.43 -0.1
2,525,048 + Psest_2372 0.43 +0.6
2,525,048 + Psest_2372 0.43 -0.3
2,525,048 + Psest_2372 0.43 +1.5
2,525,048 + Psest_2372 0.43 -0.4
2,525,048 + Psest_2372 0.43 -0.1
2,525,048 + Psest_2372 0.43 -1.3
2,525,048 + Psest_2372 0.43 +0.3
2,525,048 + Psest_2372 0.43 +1.3
2,525,048 + Psest_2372 0.43 +0.2
2,525,048 + Psest_2372 0.43 -0.3
2,525,048 + Psest_2372 0.43 -2.4
2,525,048 + Psest_2372 0.43 -0.4
2,525,048 + Psest_2372 0.43 -0.1
2,525,049 - Psest_2372 0.44 -0.2
2,525,049 - Psest_2372 0.44 -0.1
2,525,049 - Psest_2372 0.44 +0.8
2,525,129 + Psest_2372 0.56 -0.0
2,525,129 + Psest_2372 0.56 +0.6
2,525,129 + Psest_2372 0.56 -0.7
2,525,130 - Psest_2372 0.56 -0.3
2,525,130 - Psest_2372 0.56 +0.1
2,525,130 - Psest_2372 0.56 -2.1
2,525,130 - Psest_2372 0.56 -0.1
2,525,330 - Psest_2372 0.86 -0.5
2,525,330 - Psest_2372 0.86 +1.1
2,525,333 + Psest_2372 0.86 +0.4
2,525,333 + Psest_2372 0.86 -0.6
2,525,333 + Psest_2372 0.86 +1.1
2,525,333 + Psest_2372 0.86 -1.4
2,525,334 - Psest_2372 0.86 +0.9
2,525,334 - Psest_2372 0.86 -0.8
2,525,369 + +0.1
2,525,370 - +0.8
2,525,484 + +0.1
2,527,009 - Psest_2377 0.12 +0.1
2,527,169 - Psest_2377 0.28 -0.9
2,527,199 - Psest_2377 0.31 -0.1
2,527,199 - Psest_2377 0.31 -0.5

Or see this region's nucleotide sequence