Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0217 and Psest_0218 are separated by 9 nucleotides Psest_0218 and Psest_0219 are separated by 223 nucleotides Psest_0219 and Psest_0220 are separated by 209 nucleotides
Psest_0217: Psest_0217 - diguanylate cyclase (GGDEF) domain, at 223,741 to 224,955
_0217
Psest_0218: Psest_0218 - Acyl-CoA hydrolase, at 224,965 to 225,366
_0218
Psest_0219: Psest_0219 - phosphate binding protein, at 225,590 to 226,558
_0219
Psest_0220: Psest_0220 - ABC-type uncharacterized transport system, permease component, at 226,768 to 229,044
_0220
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 224.698 kb on + strand, within Psest_0217 at 224.698 kb on + strand, within Psest_0217 at 224.698 kb on + strand, within Psest_0217 at 224.698 kb on + strand, within Psest_0217 at 224.698 kb on + strand, within Psest_0217 at 224.699 kb on - strand, within Psest_0217 at 224.699 kb on - strand, within Psest_0217 at 224.699 kb on - strand, within Psest_0217 at 224.699 kb on - strand, within Psest_0217 at 224.762 kb on + strand, within Psest_0217 at 224.762 kb on + strand, within Psest_0217 at 224.763 kb on - strand, within Psest_0217 at 224.763 kb on - strand, within Psest_0217 at 224.766 kb on + strand, within Psest_0217 at 224.766 kb on + strand, within Psest_0217 at 224.766 kb on + strand, within Psest_0217 at 224.767 kb on - strand, within Psest_0217 at 224.854 kb on + strand at 224.879 kb on - strand at 225.128 kb on + strand, within Psest_0218 at 225.129 kb on - strand, within Psest_0218 at 225.129 kb on - strand, within Psest_0218 at 225.129 kb on - strand, within Psest_0218 at 225.129 kb on - strand, within Psest_0218 at 225.129 kb on - strand, within Psest_0218 at 225.129 kb on - strand, within Psest_0218 at 225.269 kb on + strand, within Psest_0218 at 225.269 kb on + strand, within Psest_0218 at 225.417 kb on - strand at 225.417 kb on - strand at 225.438 kb on + strand at 225.439 kb on - strand at 225.439 kb on - strand at 225.516 kb on + strand at 225.516 kb on + strand at 225.516 kb on + strand at 225.516 kb on + strand at 225.516 kb on + strand at 225.516 kb on + strand at 225.517 kb on - strand at 225.517 kb on - strand at 225.517 kb on - strand at 225.517 kb on - strand at 225.528 kb on - strand at 225.540 kb on + strand at 225.578 kb on + strand at 226.499 kb on + strand at 226.499 kb on + strand at 226.499 kb on + strand at 226.585 kb on - strand at 226.585 kb on - strand at 226.646 kb on + strand at 226.646 kb on + strand at 226.646 kb on + strand at 226.646 kb on + strand at 226.646 kb on + strand at 226.647 kb on - strand at 226.647 kb on - strand at 226.647 kb on - strand at 226.647 kb on - strand at 226.647 kb on - strand at 226.647 kb on - strand at 226.647 kb on - strand at 226.650 kb on + strand at 226.650 kb on + strand at 226.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 224,698 + Psest_0217 0.79 +0.7 224,698 + Psest_0217 0.79 -1.7 224,698 + Psest_0217 0.79 -0.6 224,698 + Psest_0217 0.79 +1.1 224,698 + Psest_0217 0.79 -0.3 224,699 - Psest_0217 0.79 -1.8 224,699 - Psest_0217 0.79 +0.5 224,699 - Psest_0217 0.79 +0.2 224,699 - Psest_0217 0.79 -0.8 224,762 + Psest_0217 0.84 +0.4 224,762 + Psest_0217 0.84 -0.5 224,763 - Psest_0217 0.84 +0.3 224,763 - Psest_0217 0.84 -0.2 224,766 + Psest_0217 0.84 -1.0 224,766 + Psest_0217 0.84 -0.1 224,766 + Psest_0217 0.84 +0.8 224,767 - Psest_0217 0.84 -2.1 224,854 + +0.4 224,879 - +0.1 225,128 + Psest_0218 0.41 -1.1 225,129 - Psest_0218 0.41 +0.0 225,129 - Psest_0218 0.41 -0.4 225,129 - Psest_0218 0.41 -0.0 225,129 - Psest_0218 0.41 +0.5 225,129 - Psest_0218 0.41 -2.0 225,129 - Psest_0218 0.41 -1.3 225,269 + Psest_0218 0.76 +1.6 225,269 + Psest_0218 0.76 -0.0 225,417 - -1.0 225,417 - +0.0 225,438 + +0.7 225,439 - -0.8 225,439 - +1.0 225,516 + -0.4 225,516 + -1.0 225,516 + +0.0 225,516 + +0.2 225,516 + +1.1 225,516 + -0.2 225,517 - +1.6 225,517 - +0.1 225,517 - +0.2 225,517 - +2.7 225,528 - -0.4 225,540 + -2.0 225,578 + +1.6 226,499 + +0.2 226,499 + +0.0 226,499 + +0.3 226,585 - -0.3 226,585 - -0.7 226,646 + -0.7 226,646 + -0.2 226,646 + -0.3 226,646 + -0.1 226,646 + -2.5 226,647 - -0.0 226,647 - +1.2 226,647 - +0.3 226,647 - +0.1 226,647 - -0.4 226,647 - -0.5 226,647 - -1.0 226,650 + +0.7 226,650 + -0.3 226,651 - -0.0
Or see this region's nucleotide sequence