Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2137

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2136 and Psest_2137 are separated by 110 nucleotidesPsest_2137 and Psest_2138 are separated by 284 nucleotides Psest_2136: Psest_2136 - Predicted homoserine dehydrogenase, at 2,272,403 to 2,273,635 _2136 Psest_2137: Psest_2137 - Uncharacterized membrane protein, putative virulence factor, at 2,273,746 to 2,275,212 _2137 Psest_2138: Psest_2138 - RND family efflux transporter, MFP subunit, at 2,275,497 to 2,276,738 _2138 Position (kb) 2273 2274 2275 2276Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2272.834 kb on + strand, within Psest_2136at 2272.835 kb on - strand, within Psest_2136at 2273.090 kb on + strand, within Psest_2136at 2273.090 kb on + strand, within Psest_2136at 2273.171 kb on + strand, within Psest_2136at 2273.171 kb on + strand, within Psest_2136at 2273.171 kb on + strand, within Psest_2136at 2273.172 kb on - strand, within Psest_2136at 2273.172 kb on - strand, within Psest_2136at 2273.181 kb on + strand, within Psest_2136at 2273.181 kb on + strand, within Psest_2136at 2273.182 kb on - strand, within Psest_2136at 2273.199 kb on - strand, within Psest_2136at 2273.199 kb on - strand, within Psest_2136at 2273.287 kb on + strand, within Psest_2136at 2273.424 kb on + strand, within Psest_2136at 2273.425 kb on - strand, within Psest_2136at 2273.615 kb on - strandat 2273.844 kb on - strandat 2275.350 kb on + strandat 2275.350 kb on + strandat 2275.350 kb on + strandat 2275.356 kb on + strandat 2275.356 kb on + strandat 2275.356 kb on + strandat 2275.356 kb on + strandat 2275.357 kb on - strandat 2275.357 kb on - strandat 2275.357 kb on - strandat 2275.357 kb on - strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.405 kb on + strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.406 kb on - strandat 2275.415 kb on + strandat 2275.462 kb on + strandat 2275.851 kb on + strand, within Psest_2138at 2275.851 kb on + strand, within Psest_2138at 2275.851 kb on + strand, within Psest_2138at 2275.851 kb on + strand, within Psest_2138at 2275.852 kb on - strand, within Psest_2138

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,272,834 + Psest_2136 0.35 +1.1
2,272,835 - Psest_2136 0.35 +0.5
2,273,090 + Psest_2136 0.56 +0.9
2,273,090 + Psest_2136 0.56 +0.6
2,273,171 + Psest_2136 0.62 +0.4
2,273,171 + Psest_2136 0.62 +0.5
2,273,171 + Psest_2136 0.62 +0.9
2,273,172 - Psest_2136 0.62 +1.0
2,273,172 - Psest_2136 0.62 +0.5
2,273,181 + Psest_2136 0.63 -0.1
2,273,181 + Psest_2136 0.63 -0.1
2,273,182 - Psest_2136 0.63 +0.4
2,273,199 - Psest_2136 0.65 +0.4
2,273,199 - Psest_2136 0.65 +1.2
2,273,287 + Psest_2136 0.72 +0.4
2,273,424 + Psest_2136 0.83 +0.8
2,273,425 - Psest_2136 0.83 +0.3
2,273,615 - +1.7
2,273,844 - -1.2
2,275,350 + +1.1
2,275,350 + +0.6
2,275,350 + +0.7
2,275,356 + +0.2
2,275,356 + -0.1
2,275,356 + -0.2
2,275,356 + -0.9
2,275,357 - +0.1
2,275,357 - +0.1
2,275,357 - +0.9
2,275,357 - -2.8
2,275,405 + -0.6
2,275,405 + -0.5
2,275,405 + +0.1
2,275,405 + +0.1
2,275,405 + +1.8
2,275,405 + -0.4
2,275,405 + +0.1
2,275,405 + +0.9
2,275,405 + +0.5
2,275,405 + +0.2
2,275,405 + -2.3
2,275,405 + -0.1
2,275,405 + +0.1
2,275,405 + -0.9
2,275,405 + -0.5
2,275,405 + -0.1
2,275,405 + +0.5
2,275,405 + +0.1
2,275,405 + +1.0
2,275,405 + +0.5
2,275,405 + +0.8
2,275,405 + +0.1
2,275,405 + +0.1
2,275,405 + -0.0
2,275,405 + +1.6
2,275,405 + -0.2
2,275,405 + +0.2
2,275,405 + +0.1
2,275,405 + +1.0
2,275,405 + +2.1
2,275,405 + +0.3
2,275,405 + +1.6
2,275,405 + +1.1
2,275,406 - +1.7
2,275,406 - +0.6
2,275,406 - +0.5
2,275,406 - -0.3
2,275,406 - -0.8
2,275,406 - -0.2
2,275,406 - -0.7
2,275,406 - -1.1
2,275,406 - +0.8
2,275,406 - -0.2
2,275,406 - +0.5
2,275,406 - +0.7
2,275,406 - +0.5
2,275,406 - -0.0
2,275,406 - -0.8
2,275,415 + -1.2
2,275,462 + -0.4
2,275,851 + Psest_2138 0.29 +2.3
2,275,851 + Psest_2138 0.29 +0.8
2,275,851 + Psest_2138 0.29 +0.9
2,275,851 + Psest_2138 0.29 +0.1
2,275,852 - Psest_2138 0.29 -0.9

Or see this region's nucleotide sequence