Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2113

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2112 and Psest_2113 are separated by 257 nucleotidesPsest_2113 and Psest_2114 are separated by 92 nucleotides Psest_2112: Psest_2112 - Methyl-accepting chemotaxis protein, at 2,240,760 to 2,242,394 _2112 Psest_2113: Psest_2113 - undecaprenyl-diphosphatase UppP, at 2,242,652 to 2,243,482 _2113 Psest_2114: Psest_2114 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,243,575 to 2,244,534 _2114 Position (kb) 2242 2243 2244Strain fitness (log2 ratio) -2 -1 0 1 2at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.959 kb on - strand, within Psest_2112at 2242.115 kb on - strand, within Psest_2112at 2242.117 kb on + strand, within Psest_2112at 2242.117 kb on + strand, within Psest_2112at 2242.276 kb on + strandat 2242.276 kb on + strandat 2242.276 kb on + strandat 2242.277 kb on - strandat 2242.368 kb on + strandat 2242.413 kb on + strandat 2242.413 kb on + strandat 2242.432 kb on + strandat 2242.494 kb on + strandat 2242.552 kb on + strandat 2242.552 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2243.632 kb on + strandat 2243.632 kb on + strandat 2243.803 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.032 kb on - strand, within Psest_2114at 2244.032 kb on - strand, within Psest_2114at 2244.040 kb on + strand, within Psest_2114at 2244.040 kb on + strand, within Psest_2114at 2244.112 kb on + strand, within Psest_2114at 2244.112 kb on + strand, within Psest_2114at 2244.113 kb on - strand, within Psest_2114at 2244.113 kb on - strand, within Psest_2114at 2244.113 kb on - strand, within Psest_2114at 2244.207 kb on + strand, within Psest_2114at 2244.230 kb on - strand, within Psest_2114at 2244.391 kb on + strand, within Psest_2114at 2244.392 kb on - strand, within Psest_2114

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,241,829 + Psest_2112 0.65 -2.4
2,241,829 + Psest_2112 0.65 +0.6
2,241,829 + Psest_2112 0.65 +0.3
2,241,829 + Psest_2112 0.65 -1.1
2,241,829 + Psest_2112 0.65 -0.1
2,241,862 + Psest_2112 0.67 -0.7
2,241,862 + Psest_2112 0.67 +0.2
2,241,862 + Psest_2112 0.67 +0.1
2,241,862 + Psest_2112 0.67 -0.2
2,241,862 + Psest_2112 0.67 +0.5
2,241,862 + Psest_2112 0.67 -1.2
2,241,862 + Psest_2112 0.67 -0.2
2,241,862 + Psest_2112 0.67 +1.0
2,241,862 + Psest_2112 0.67 +0.9
2,241,862 + Psest_2112 0.67 -0.3
2,241,862 + Psest_2112 0.67 +0.1
2,241,862 + Psest_2112 0.67 -0.6
2,241,862 + Psest_2112 0.67 +0.3
2,241,862 + Psest_2112 0.67 +0.2
2,241,862 + Psest_2112 0.67 -0.6
2,241,862 + Psest_2112 0.67 -0.1
2,241,862 + Psest_2112 0.67 +0.0
2,241,862 + Psest_2112 0.67 -0.9
2,241,862 + Psest_2112 0.67 +0.2
2,241,862 + Psest_2112 0.67 +0.8
2,241,862 + Psest_2112 0.67 -0.0
2,241,862 + Psest_2112 0.67 -0.4
2,241,862 + Psest_2112 0.67 -0.0
2,241,862 + Psest_2112 0.67 -0.1
2,241,862 + Psest_2112 0.67 -0.4
2,241,862 + Psest_2112 0.67 +0.2
2,241,862 + Psest_2112 0.67 +0.3
2,241,863 - Psest_2112 0.67 -0.9
2,241,863 - Psest_2112 0.67 -0.8
2,241,863 - Psest_2112 0.67 -0.8
2,241,863 - Psest_2112 0.67 +1.0
2,241,863 - Psest_2112 0.67 -1.2
2,241,863 - Psest_2112 0.67 -0.9
2,241,863 - Psest_2112 0.67 +0.7
2,241,863 - Psest_2112 0.67 -0.2
2,241,863 - Psest_2112 0.67 +0.7
2,241,910 + Psest_2112 0.70 -0.0
2,241,910 + Psest_2112 0.70 -0.1
2,241,910 + Psest_2112 0.70 -0.6
2,241,910 + Psest_2112 0.70 +0.9
2,241,910 + Psest_2112 0.70 -0.1
2,241,910 + Psest_2112 0.70 -0.3
2,241,911 - Psest_2112 0.70 +1.4
2,241,911 - Psest_2112 0.70 -0.4
2,241,911 - Psest_2112 0.70 +0.1
2,241,911 - Psest_2112 0.70 +0.7
2,241,911 - Psest_2112 0.70 -0.8
2,241,958 + Psest_2112 0.73 +1.4
2,241,958 + Psest_2112 0.73 -0.4
2,241,958 + Psest_2112 0.73 +0.4
2,241,958 + Psest_2112 0.73 -0.7
2,241,958 + Psest_2112 0.73 +0.6
2,241,958 + Psest_2112 0.73 +0.4
2,241,958 + Psest_2112 0.73 -0.4
2,241,958 + Psest_2112 0.73 -0.9
2,241,958 + Psest_2112 0.73 -0.6
2,241,959 - Psest_2112 0.73 +2.2
2,242,115 - Psest_2112 0.83 -1.1
2,242,117 + Psest_2112 0.83 +0.1
2,242,117 + Psest_2112 0.83 -0.4
2,242,276 + +0.9
2,242,276 + +1.1
2,242,276 + +0.2
2,242,277 - -0.8
2,242,368 + -0.0
2,242,413 + +0.1
2,242,413 + +0.7
2,242,432 + +0.1
2,242,494 + +0.2
2,242,552 + +0.4
2,242,552 + -0.3
2,242,600 + -1.8
2,242,600 + +0.4
2,242,600 + -0.3
2,242,600 + +0.5
2,242,600 + +0.6
2,242,600 + +0.4
2,242,600 + -0.0
2,242,600 + +0.3
2,242,602 + +1.4
2,242,602 + +0.7
2,242,602 + +0.3
2,242,602 + +0.1
2,242,602 + -0.8
2,242,602 + -0.7
2,242,602 + +0.4
2,242,602 + +0.9
2,242,602 + +0.2
2,242,602 + +0.6
2,242,602 + +0.1
2,243,632 + +0.1
2,243,632 + +0.9
2,243,803 + Psest_2114 0.24 -0.3
2,244,031 + Psest_2114 0.47 +0.9
2,244,031 + Psest_2114 0.47 -0.8
2,244,031 + Psest_2114 0.47 +0.8
2,244,031 + Psest_2114 0.47 +0.3
2,244,031 + Psest_2114 0.47 +0.3
2,244,031 + Psest_2114 0.47 -0.6
2,244,031 + Psest_2114 0.47 +1.5
2,244,031 + Psest_2114 0.47 -0.2
2,244,031 + Psest_2114 0.47 +0.4
2,244,032 - Psest_2114 0.48 -0.1
2,244,032 - Psest_2114 0.48 -2.4
2,244,040 + Psest_2114 0.48 +1.0
2,244,040 + Psest_2114 0.48 -0.4
2,244,112 + Psest_2114 0.56 -0.3
2,244,112 + Psest_2114 0.56 +0.3
2,244,113 - Psest_2114 0.56 +1.2
2,244,113 - Psest_2114 0.56 +0.1
2,244,113 - Psest_2114 0.56 +0.4
2,244,207 + Psest_2114 0.66 -0.5
2,244,230 - Psest_2114 0.68 -0.6
2,244,391 + Psest_2114 0.85 +1.6
2,244,392 - Psest_2114 0.85 +1.2

Or see this region's nucleotide sequence