Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1917

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1916 and Psest_1917 are separated by 215 nucleotidesPsest_1917 and Psest_1918 overlap by 1 nucleotidesPsest_1918 and Psest_1919 overlap by 4 nucleotides Psest_1916: Psest_1916 - Uncharacterized protein conserved in bacteria, at 2,023,453 to 2,024,433 _1916 Psest_1917: Psest_1917 - Predicted sugar kinase, at 2,024,649 to 2,025,536 _1917 Psest_1918: Psest_1918 - Calcineurin-like phosphoesterase., at 2,025,536 to 2,026,507 _1918 Psest_1919: Psest_1919 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 2,026,504 to 2,027,364 _1919 Position (kb) 2024 2025 2026Strain fitness (log2 ratio) -2 -1 0 1at 2024.173 kb on + strand, within Psest_1916at 2024.174 kb on - strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.187 kb on - strand, within Psest_1916at 2024.187 kb on - strand, within Psest_1916at 2024.356 kb on + strandat 2024.357 kb on - strandat 2025.758 kb on + strand, within Psest_1918at 2025.758 kb on + strand, within Psest_1918at 2025.758 kb on + strand, within Psest_1918at 2025.800 kb on + strand, within Psest_1918at 2025.800 kb on + strand, within Psest_1918at 2025.800 kb on + strand, within Psest_1918at 2025.800 kb on + strand, within Psest_1918at 2025.936 kb on - strand, within Psest_1918at 2026.123 kb on + strand, within Psest_1918at 2026.217 kb on + strand, within Psest_1918at 2026.217 kb on + strand, within Psest_1918at 2026.217 kb on + strand, within Psest_1918at 2026.217 kb on + strand, within Psest_1918at 2026.218 kb on - strand, within Psest_1918at 2026.397 kb on + strand, within Psest_1918

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,024,173 + Psest_1916 0.73 -0.1
2,024,174 - Psest_1916 0.73 -1.0
2,024,183 + Psest_1916 0.74 +0.1
2,024,183 + Psest_1916 0.74 -0.1
2,024,183 + Psest_1916 0.74 -1.1
2,024,183 + Psest_1916 0.74 -2.1
2,024,183 + Psest_1916 0.74 -0.4
2,024,183 + Psest_1916 0.74 -0.0
2,024,186 + Psest_1916 0.75 +0.1
2,024,186 + Psest_1916 0.75 +1.2
2,024,186 + Psest_1916 0.75 +0.3
2,024,187 - Psest_1916 0.75 -0.6
2,024,187 - Psest_1916 0.75 +0.4
2,024,356 + +0.0
2,024,357 - -0.3
2,025,758 + Psest_1918 0.23 +0.2
2,025,758 + Psest_1918 0.23 -0.4
2,025,758 + Psest_1918 0.23 +1.3
2,025,800 + Psest_1918 0.27 -1.9
2,025,800 + Psest_1918 0.27 -0.4
2,025,800 + Psest_1918 0.27 -0.4
2,025,800 + Psest_1918 0.27 +0.7
2,025,936 - Psest_1918 0.41 -0.1
2,026,123 + Psest_1918 0.60 -1.8
2,026,217 + Psest_1918 0.70 -1.1
2,026,217 + Psest_1918 0.70 -0.2
2,026,217 + Psest_1918 0.70 +0.6
2,026,217 + Psest_1918 0.70 +0.8
2,026,218 - Psest_1918 0.70 +0.1
2,026,397 + Psest_1918 0.89 -0.4

Or see this region's nucleotide sequence