Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1684

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1682 and Psest_1683 are separated by 10 nucleotidesPsest_1683 and Psest_1684 are separated by 103 nucleotidesPsest_1684 and Psest_1685 are separated by 12 nucleotidesPsest_1685 and Psest_1686 are separated by 33 nucleotides Psest_1682: Psest_1682 - Periplasmic serine proteases (ClpP class), at 1,791,848 to 1,792,831 _1682 Psest_1683: Psest_1683 - MAF protein, at 1,792,842 to 1,793,420 _1683 Psest_1684: Psest_1684 - Predicted metal-binding, possibly nucleic acid-binding protein, at 1,793,524 to 1,794,051 _1684 Psest_1685: Psest_1685 - ribosomal protein L32, at 1,794,064 to 1,794,246 _1685 Psest_1686: Psest_1686 - fatty acid/phospholipid synthesis protein PlsX, at 1,794,280 to 1,795,320 _1686 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -2 -1 0 1 2at 1793.009 kb on - strand, within Psest_1683at 1793.078 kb on + strand, within Psest_1683at 1793.078 kb on + strand, within Psest_1683at 1793.079 kb on - strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.373 kb on + strandat 1793.373 kb on + strandat 1793.373 kb on + strandat 1793.373 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.432 kb on - strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.434 kb on - strandat 1793.434 kb on - strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.436 kb on - strandat 1793.436 kb on - strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.441 kb on + strandat 1793.441 kb on + strandat 1793.452 kb on + strandat 1794.244 kb on + strandat 1794.663 kb on + strand, within Psest_1686at 1794.719 kb on + strand, within Psest_1686at 1794.720 kb on - strand, within Psest_1686at 1794.720 kb on - strand, within Psest_1686at 1794.851 kb on + strand, within Psest_1686at 1794.953 kb on + strand, within Psest_1686at 1794.953 kb on + strand, within Psest_1686at 1794.953 kb on + strand, within Psest_1686at 1794.953 kb on + strand, within Psest_1686at 1794.953 kb on + strand, within Psest_1686at 1794.954 kb on - strand, within Psest_1686at 1794.954 kb on - strand, within Psest_1686at 1794.954 kb on - strand, within Psest_1686

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
1,793,009 - Psest_1683 0.29 -0.2
1,793,078 + Psest_1683 0.41 -0.7
1,793,078 + Psest_1683 0.41 -0.7
1,793,079 - Psest_1683 0.41 +0.4
1,793,171 + Psest_1683 0.57 +0.4
1,793,171 + Psest_1683 0.57 +0.2
1,793,171 + Psest_1683 0.57 +0.7
1,793,171 + Psest_1683 0.57 +0.0
1,793,172 - Psest_1683 0.57 -0.5
1,793,172 - Psest_1683 0.57 +0.1
1,793,172 - Psest_1683 0.57 -0.4
1,793,172 - Psest_1683 0.57 -0.3
1,793,172 - Psest_1683 0.57 +0.6
1,793,373 + -0.4
1,793,373 + -0.6
1,793,373 + -0.0
1,793,373 + +0.4
1,793,431 + -1.6
1,793,431 + -0.6
1,793,431 + -0.0
1,793,431 + -0.2
1,793,431 + -1.6
1,793,431 + -0.7
1,793,432 - -1.4
1,793,433 + +0.4
1,793,433 + +0.6
1,793,433 + -0.6
1,793,433 + +0.1
1,793,433 + -0.9
1,793,433 + -0.6
1,793,433 + +0.1
1,793,433 + +0.1
1,793,433 + -0.8
1,793,433 + +0.4
1,793,433 + +0.7
1,793,433 + +1.7
1,793,433 + -0.2
1,793,433 + +0.0
1,793,433 + +0.7
1,793,433 + +1.6
1,793,433 + -0.4
1,793,433 + -0.2
1,793,433 + -1.2
1,793,433 + -0.5
1,793,433 + -0.2
1,793,433 + -0.1
1,793,433 + +0.3
1,793,433 + -0.4
1,793,434 - +1.0
1,793,434 - -1.7
1,793,435 + +1.8
1,793,435 + +0.2
1,793,435 + -0.1
1,793,435 + +0.4
1,793,435 + +0.7
1,793,435 + +0.9
1,793,435 + -0.1
1,793,435 + +0.5
1,793,435 + +0.6
1,793,435 + -0.0
1,793,435 + +0.0
1,793,435 + +1.3
1,793,435 + -0.1
1,793,435 + +0.6
1,793,435 + +0.7
1,793,435 + +1.0
1,793,435 + +0.7
1,793,435 + -1.7
1,793,435 + +2.7
1,793,436 - -0.6
1,793,436 - +0.7
1,793,437 + -1.0
1,793,437 + -0.2
1,793,437 + -0.1
1,793,437 + -0.7
1,793,437 + -0.7
1,793,437 + -0.7
1,793,437 + -0.5
1,793,437 + +0.7
1,793,437 + +0.6
1,793,437 + -0.6
1,793,437 + -1.3
1,793,437 + -0.4
1,793,437 + -0.1
1,793,437 + +0.3
1,793,437 + +0.0
1,793,437 + +0.9
1,793,437 + +0.3
1,793,437 + -1.1
1,793,437 + -0.6
1,793,437 + +0.7
1,793,437 + -0.5
1,793,437 + +0.3
1,793,438 - -1.2
1,793,438 - -0.6
1,793,438 - +0.4
1,793,438 - -0.3
1,793,438 - -1.4
1,793,438 - -0.7
1,793,438 - -0.8
1,793,438 - -1.6
1,793,438 - +0.4
1,793,438 - -0.5
1,793,438 - -1.9
1,793,441 + +0.3
1,793,441 + -0.4
1,793,452 + -0.5
1,794,244 + -0.2
1,794,663 + Psest_1686 0.37 -2.3
1,794,719 + Psest_1686 0.42 -1.4
1,794,720 - Psest_1686 0.42 -2.7
1,794,720 - Psest_1686 0.42 -1.9
1,794,851 + Psest_1686 0.55 -1.0
1,794,953 + Psest_1686 0.65 -0.9
1,794,953 + Psest_1686 0.65 -0.4
1,794,953 + Psest_1686 0.65 -1.3
1,794,953 + Psest_1686 0.65 -1.1
1,794,953 + Psest_1686 0.65 -1.4
1,794,954 - Psest_1686 0.65 -1.9
1,794,954 - Psest_1686 0.65 -1.3
1,794,954 - Psest_1686 0.65 -2.7

Or see this region's nucleotide sequence