Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1678

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1676 and Psest_1677 are separated by 1 nucleotidesPsest_1677 and Psest_1678 overlap by 4 nucleotidesPsest_1678 and Psest_1679 are separated by 390 nucleotides Psest_1676: Psest_1676 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,783,844 to 1,784,608 _1676 Psest_1677: Psest_1677 - Protein-tyrosine-phosphatase, at 1,784,610 to 1,785,077 _1677 Psest_1678: Psest_1678 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,785,074 to 1,786,093 _1678 Psest_1679: Psest_1679 - ribonuclease, Rne/Rng family, at 1,786,484 to 1,789,666 _1679 Position (kb) 1785 1786 1787Strain fitness (log2 ratio) -1 0 1 2at 1784.639 kb on + strandat 1784.971 kb on + strand, within Psest_1677at 1784.985 kb on + strand, within Psest_1677at 1784.985 kb on + strand, within Psest_1677at 1785.061 kb on + strandat 1786.147 kb on - strandat 1786.147 kb on - strandat 1786.236 kb on + strandat 1786.236 kb on + strandat 1786.237 kb on - strandat 1786.336 kb on + strandat 1786.337 kb on - strandat 1786.337 kb on - strandat 1786.337 kb on - strandat 1786.338 kb on + strandat 1786.353 kb on - strandat 1786.383 kb on + strandat 1786.384 kb on - strandat 1786.410 kb on + strandat 1786.410 kb on + strandat 1786.410 kb on + strandat 1786.411 kb on - strandat 1786.595 kb on + strandat 1786.596 kb on - strandat 1786.707 kb on - strandat 1787.061 kb on - strand, within Psest_1679

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,784,639 + +0.5
1,784,971 + Psest_1677 0.77 +0.1
1,784,985 + Psest_1677 0.80 +0.1
1,784,985 + Psest_1677 0.80 -0.4
1,785,061 + -0.3
1,786,147 - -1.1
1,786,147 - +0.1
1,786,236 + -0.2
1,786,236 + +0.1
1,786,237 - -0.6
1,786,336 + -0.3
1,786,337 - -0.4
1,786,337 - +0.3
1,786,337 - +1.3
1,786,338 + -0.1
1,786,353 - -1.2
1,786,383 + +0.2
1,786,384 - +0.6
1,786,410 + +0.3
1,786,410 + +2.3
1,786,410 + -0.4
1,786,411 - +0.0
1,786,595 + -0.2
1,786,596 - +0.7
1,786,707 - -1.2
1,787,061 - Psest_1679 0.18 -1.7

Or see this region's nucleotide sequence