Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0156

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0154 and Psest_0155 are separated by 36 nucleotidesPsest_0155 and Psest_0156 are separated by 98 nucleotidesPsest_0156 and Psest_0157 are separated by 86 nucleotides Psest_0154: Psest_0154 - Uncharacterized conserved protein, at 153,331 to 153,591 _0154 Psest_0155: Psest_0155 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 153,628 to 154,371 _0155 Psest_0156: Psest_0156 - imidazoleglycerol phosphate synthase, cyclase subunit, at 154,470 to 155,240 _0156 Psest_0157: Psest_0157 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 155,327 to 156,076 _0157 Position (kb) 154 155 156Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 153.499 kb on + strand, within Psest_0154at 153.499 kb on + strand, within Psest_0154at 153.499 kb on + strand, within Psest_0154at 153.500 kb on - strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.904 kb on + strand, within Psest_0155at 153.904 kb on + strand, within Psest_0155at 153.904 kb on + strand, within Psest_0155at 153.905 kb on - strand, within Psest_0155at 153.905 kb on - strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.926 kb on - strand, within Psest_0155at 153.926 kb on - strand, within Psest_0155at 153.926 kb on - strand, within Psest_0155at 154.123 kb on + strand, within Psest_0155at 154.306 kb on + strandat 154.306 kb on + strandat 154.306 kb on + strandat 154.307 kb on - strandat 154.307 kb on - strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.358 kb on - strandat 154.412 kb on + strandat 154.412 kb on + strandat 154.412 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.670 kb on - strand, within Psest_0156at 155.184 kb on + strandat 155.184 kb on + strandat 155.184 kb on + strandat 155.185 kb on - strandat 155.185 kb on - strandat 155.185 kb on - strandat 155.185 kb on - strandat 155.208 kb on + strandat 155.209 kb on - strandat 155.266 kb on + strandat 155.267 kb on - strandat 155.267 kb on - strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.368 kb on - strandat 155.438 kb on + strand, within Psest_0157at 155.439 kb on - strand, within Psest_0157at 155.540 kb on + strand, within Psest_0157at 155.540 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.577 kb on - strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.604 kb on - strand, within Psest_0157at 155.604 kb on - strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.759 kb on + strand, within Psest_0157at 155.759 kb on + strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.951 kb on - strand, within Psest_0157at 155.963 kb on + strand, within Psest_0157at 155.964 kb on - strand, within Psest_0157at 156.069 kb on - strandat 156.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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153,499 + Psest_0154 0.64 +0.7
153,499 + Psest_0154 0.64 -1.1
153,499 + Psest_0154 0.64 +0.5
153,500 - Psest_0154 0.65 -2.9
153,502 + Psest_0154 0.66 -0.4
153,502 + Psest_0154 0.66 +0.3
153,502 + Psest_0154 0.66 +0.6
153,502 + Psest_0154 0.66 +1.2
153,502 + Psest_0154 0.66 +0.5
153,502 + Psest_0154 0.66 +0.1
153,502 + Psest_0154 0.66 +0.6
153,502 + Psest_0154 0.66 -0.2
153,502 + Psest_0154 0.66 +1.9
153,502 + Psest_0154 0.66 -0.1
153,503 - Psest_0154 0.66 -1.3
153,503 - Psest_0154 0.66 -3.3
153,503 - Psest_0154 0.66 -5.6
153,503 - Psest_0154 0.66 -3.6
153,503 - Psest_0154 0.66 -2.5
153,503 - Psest_0154 0.66 -3.1
153,904 + Psest_0155 0.37 -3.0
153,904 + Psest_0155 0.37 -3.1
153,904 + Psest_0155 0.37 -3.5
153,905 - Psest_0155 0.37 -2.1
153,905 - Psest_0155 0.37 -4.4
153,925 + Psest_0155 0.40 -2.2
153,925 + Psest_0155 0.40 -5.1
153,925 + Psest_0155 0.40 -4.1
153,925 + Psest_0155 0.40 -2.3
153,925 + Psest_0155 0.40 -2.3
153,925 + Psest_0155 0.40 -1.6
153,926 - Psest_0155 0.40 -6.5
153,926 - Psest_0155 0.40 -3.0
153,926 - Psest_0155 0.40 -3.8
154,123 + Psest_0155 0.67 -2.3
154,306 + -2.3
154,306 + -3.1
154,306 + -6.2
154,307 - -2.1
154,307 - -3.7
154,357 + +0.0
154,357 + +0.1
154,357 + +0.1
154,357 + +0.6
154,357 + -1.7
154,358 - -2.5
154,412 + -0.6
154,412 + -0.4
154,412 + -0.0
154,419 + -1.2
154,419 + +0.3
154,419 + -0.4
154,419 + +0.3
154,419 + +0.4
154,420 - -3.4
154,420 - -1.8
154,420 - -3.6
154,420 - -3.4
154,420 - -1.5
154,670 - Psest_0156 0.26 -1.1
155,184 + -4.4
155,184 + -5.7
155,184 + -4.1
155,185 - -1.8
155,185 - -3.5
155,185 - -1.3
155,185 - -2.8
155,208 + -2.7
155,209 - -2.3
155,266 + +0.3
155,267 - -0.7
155,267 - -0.9
155,277 + +0.8
155,277 + +2.1
155,277 + +0.9
155,277 + +0.7
155,277 + -0.4
155,278 - +0.5
155,278 - -0.7
155,278 - +0.1
155,278 - -0.3
155,278 - +0.3
155,278 - +0.6
155,368 - -0.7
155,438 + Psest_0157 0.15 +1.1
155,439 - Psest_0157 0.15 +0.0
155,540 + Psest_0157 0.28 +0.7
155,540 + Psest_0157 0.28 -0.9
155,576 + Psest_0157 0.33 +0.7
155,576 + Psest_0157 0.33 -0.3
155,576 + Psest_0157 0.33 -1.5
155,577 - Psest_0157 0.33 -0.7
155,603 + Psest_0157 0.37 -0.0
155,603 + Psest_0157 0.37 +0.9
155,603 + Psest_0157 0.37 +0.1
155,603 + Psest_0157 0.37 +0.1
155,604 - Psest_0157 0.37 -1.5
155,604 - Psest_0157 0.37 -0.6
155,744 + Psest_0157 0.56 -0.7
155,744 + Psest_0157 0.56 +1.7
155,744 + Psest_0157 0.56 -2.8
155,744 + Psest_0157 0.56 -0.0
155,744 + Psest_0157 0.56 +0.4
155,744 + Psest_0157 0.56 -0.6
155,745 - Psest_0157 0.56 -0.3
155,745 - Psest_0157 0.56 +1.0
155,745 - Psest_0157 0.56 +1.2
155,759 + Psest_0157 0.58 -2.3
155,759 + Psest_0157 0.58 -0.8
155,760 - Psest_0157 0.58 +0.9
155,760 - Psest_0157 0.58 +0.4
155,760 - Psest_0157 0.58 +0.7
155,760 - Psest_0157 0.58 -0.0
155,951 - Psest_0157 0.83 -1.4
155,963 + Psest_0157 0.85 -0.5
155,964 - Psest_0157 0.85 +0.8
156,069 - +1.4
156,069 - -0.6

Or see this region's nucleotide sequence