Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0131

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0130 and Psest_0131 are separated by 11 nucleotidesPsest_0131 and Psest_0132 are separated by 4 nucleotides Psest_0130: Psest_0130 - Uncharacterized conserved protein, at 128,434 to 130,356 _0130 Psest_0131: Psest_0131 - type VI secretion system lysozyme-related protein, at 130,368 to 130,775 _0131 Psest_0132: Psest_0132 - type VI secretion protein, EvpB/VC_A0108 family, at 130,780 to 132,258 _0132 Position (kb) 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 129.437 kb on - strand, within Psest_0130at 129.437 kb on - strand, within Psest_0130at 129.437 kb on - strand, within Psest_0130at 129.437 kb on - strand, within Psest_0130at 129.437 kb on - strand, within Psest_0130at 129.521 kb on + strand, within Psest_0130at 129.521 kb on + strand, within Psest_0130at 129.521 kb on + strand, within Psest_0130at 129.521 kb on + strand, within Psest_0130at 129.521 kb on + strand, within Psest_0130at 129.522 kb on - strand, within Psest_0130at 129.522 kb on - strand, within Psest_0130at 129.522 kb on - strand, within Psest_0130at 129.522 kb on - strand, within Psest_0130at 129.567 kb on - strand, within Psest_0130at 129.567 kb on - strand, within Psest_0130at 129.626 kb on + strand, within Psest_0130at 129.626 kb on + strand, within Psest_0130at 129.626 kb on + strand, within Psest_0130at 129.646 kb on + strand, within Psest_0130at 129.646 kb on + strand, within Psest_0130at 129.646 kb on + strand, within Psest_0130at 129.646 kb on + strand, within Psest_0130at 129.646 kb on + strand, within Psest_0130at 129.668 kb on + strand, within Psest_0130at 129.668 kb on + strand, within Psest_0130at 129.669 kb on - strand, within Psest_0130at 129.944 kb on - strand, within Psest_0130at 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 131.057 kb on + strand, within Psest_0132at 131.057 kb on + strand, within Psest_0132at 131.088 kb on - strand, within Psest_0132at 131.111 kb on + strand, within Psest_0132at 131.111 kb on + strand, within Psest_0132at 131.111 kb on + strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.250 kb on - strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.424 kb on - strand, within Psest_0132at 131.424 kb on - strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.477 kb on + strand, within Psest_0132at 131.477 kb on + strand, within Psest_0132at 131.478 kb on - strand, within Psest_0132at 131.556 kb on - strand, within Psest_0132at 131.729 kb on + strand, within Psest_0132at 131.729 kb on + strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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129,437 - Psest_0130 0.52 +0.1
129,437 - Psest_0130 0.52 +0.1
129,437 - Psest_0130 0.52 +1.5
129,437 - Psest_0130 0.52 +0.1
129,437 - Psest_0130 0.52 +0.7
129,521 + Psest_0130 0.57 -1.4
129,521 + Psest_0130 0.57 +0.2
129,521 + Psest_0130 0.57 +0.5
129,521 + Psest_0130 0.57 +0.4
129,521 + Psest_0130 0.57 -2.8
129,522 - Psest_0130 0.57 -0.2
129,522 - Psest_0130 0.57 -2.1
129,522 - Psest_0130 0.57 -0.1
129,522 - Psest_0130 0.57 +0.3
129,567 - Psest_0130 0.59 -0.6
129,567 - Psest_0130 0.59 -0.1
129,626 + Psest_0130 0.62 -2.8
129,626 + Psest_0130 0.62 -0.0
129,626 + Psest_0130 0.62 -1.0
129,646 + Psest_0130 0.63 +0.1
129,646 + Psest_0130 0.63 +0.4
129,646 + Psest_0130 0.63 -0.0
129,646 + Psest_0130 0.63 -0.7
129,646 + Psest_0130 0.63 -1.7
129,668 + Psest_0130 0.64 -0.7
129,668 + Psest_0130 0.64 -0.2
129,669 - Psest_0130 0.64 +0.2
129,944 - Psest_0130 0.79 +1.4
130,832 + +0.8
130,832 + -0.2
130,832 + +0.8
130,832 + +0.5
130,832 + +0.9
130,832 + -0.1
130,833 - +1.4
130,833 - -1.5
130,833 - -0.1
130,833 - +0.7
130,833 - -1.8
130,833 - -0.8
130,833 - -1.0
130,833 - -0.2
130,833 - +0.7
130,936 + Psest_0132 0.11 -0.4
130,936 + Psest_0132 0.11 +0.0
130,936 + Psest_0132 0.11 -0.7
130,936 + Psest_0132 0.11 +0.9
130,936 + Psest_0132 0.11 -0.3
130,936 + Psest_0132 0.11 +1.8
130,937 - Psest_0132 0.11 +0.1
130,937 - Psest_0132 0.11 -0.6
130,937 - Psest_0132 0.11 -0.2
130,937 - Psest_0132 0.11 -0.4
130,937 - Psest_0132 0.11 +0.3
130,937 - Psest_0132 0.11 -0.3
131,057 + Psest_0132 0.19 +0.4
131,057 + Psest_0132 0.19 +0.2
131,088 - Psest_0132 0.21 +1.6
131,111 + Psest_0132 0.22 +0.4
131,111 + Psest_0132 0.22 +0.4
131,111 + Psest_0132 0.22 -0.6
131,112 - Psest_0132 0.22 +0.4
131,112 - Psest_0132 0.22 +0.2
131,112 - Psest_0132 0.22 +0.2
131,112 - Psest_0132 0.22 +0.6
131,250 - Psest_0132 0.32 -0.5
131,423 + Psest_0132 0.43 +0.9
131,423 + Psest_0132 0.43 -0.2
131,423 + Psest_0132 0.43 -1.1
131,423 + Psest_0132 0.43 -0.3
131,424 - Psest_0132 0.44 +1.1
131,424 - Psest_0132 0.44 -0.5
131,444 + Psest_0132 0.45 +0.7
131,444 + Psest_0132 0.45 +0.1
131,444 + Psest_0132 0.45 -0.3
131,444 + Psest_0132 0.45 +0.2
131,444 + Psest_0132 0.45 -0.6
131,444 + Psest_0132 0.45 +0.2
131,445 - Psest_0132 0.45 +0.0
131,445 - Psest_0132 0.45 -0.1
131,445 - Psest_0132 0.45 +0.9
131,445 - Psest_0132 0.45 +0.9
131,477 + Psest_0132 0.47 -0.1
131,477 + Psest_0132 0.47 -0.4
131,478 - Psest_0132 0.47 -0.7
131,556 - Psest_0132 0.52 +0.1
131,729 + Psest_0132 0.64 +0.6
131,729 + Psest_0132 0.64 -0.4
131,730 - Psest_0132 0.64 +0.7
131,730 - Psest_0132 0.64 +0.3
131,730 - Psest_0132 0.64 +0.6
131,730 - Psest_0132 0.64 +1.5
131,730 - Psest_0132 0.64 -1.3
131,730 - Psest_0132 0.64 -0.4
131,730 - Psest_0132 0.64 -0.8
131,771 + Psest_0132 0.67 -0.5
131,771 + Psest_0132 0.67 +0.5
131,771 + Psest_0132 0.67 -0.1
131,771 + Psest_0132 0.67 -0.7
131,771 + Psest_0132 0.67 +1.1
131,771 + Psest_0132 0.67 -0.0
131,771 + Psest_0132 0.67 -0.1
131,772 - Psest_0132 0.67 -0.6
131,772 - Psest_0132 0.67 -1.8
131,772 - Psest_0132 0.67 +1.4
131,772 - Psest_0132 0.67 -1.4
131,772 - Psest_0132 0.67 +0.1
131,772 - Psest_0132 0.67 -0.3
131,772 - Psest_0132 0.67 +1.3
131,772 - Psest_0132 0.67 +0.0

Or see this region's nucleotide sequence