Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1039

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1038 and Psest_1039 are separated by 153 nucleotidesPsest_1039 and Psest_1040 are separated by 54 nucleotides Psest_1038: Psest_1038 - ketol-acid reductoisomerase, at 1,123,817 to 1,124,833 _1038 Psest_1039: Psest_1039 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,124,987 to 1,125,826 _1039 Psest_1040: Psest_1040 - Sulfite oxidase and related enzymes, at 1,125,881 to 1,126,888 _1040 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -1 0 1at 1124.902 kb on + strandat 1124.962 kb on + strandat 1124.962 kb on + strandat 1124.962 kb on + strandat 1124.971 kb on + strandat 1124.971 kb on + strandat 1124.971 kb on + strandat 1126.151 kb on + strand, within Psest_1040at 1126.151 kb on + strand, within Psest_1040at 1126.152 kb on - strand, within Psest_1040at 1126.496 kb on + strand, within Psest_1040at 1126.496 kb on + strand, within Psest_1040at 1126.496 kb on + strand, within Psest_1040at 1126.497 kb on - strand, within Psest_1040at 1126.497 kb on - strand, within Psest_1040at 1126.555 kb on + strand, within Psest_1040at 1126.555 kb on + strand, within Psest_1040at 1126.555 kb on + strand, within Psest_1040at 1126.556 kb on - strand, within Psest_1040at 1126.559 kb on + strand, within Psest_1040at 1126.559 kb on + strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.619 kb on + strand, within Psest_1040at 1126.619 kb on + strand, within Psest_1040at 1126.662 kb on + strand, within Psest_1040at 1126.662 kb on + strand, within Psest_1040at 1126.718 kb on + strand, within Psest_1040at 1126.718 kb on + strand, within Psest_1040at 1126.718 kb on + strand, within Psest_1040at 1126.741 kb on - strand, within Psest_1040at 1126.786 kb on + strand, within Psest_1040at 1126.786 kb on + strand, within Psest_1040at 1126.787 kb on - strand, within Psest_1040

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,124,902 + -0.7
1,124,962 + +0.1
1,124,962 + -0.4
1,124,962 + -0.1
1,124,971 + -1.4
1,124,971 + +0.2
1,124,971 + +0.9
1,126,151 + Psest_1040 0.27 +0.5
1,126,151 + Psest_1040 0.27 -0.2
1,126,152 - Psest_1040 0.27 +0.4
1,126,496 + Psest_1040 0.61 -1.0
1,126,496 + Psest_1040 0.61 +0.8
1,126,496 + Psest_1040 0.61 -1.3
1,126,497 - Psest_1040 0.61 -0.9
1,126,497 - Psest_1040 0.61 +0.4
1,126,555 + Psest_1040 0.67 -0.4
1,126,555 + Psest_1040 0.67 +0.5
1,126,555 + Psest_1040 0.67 +0.6
1,126,556 - Psest_1040 0.67 +0.0
1,126,559 + Psest_1040 0.67 +0.5
1,126,559 + Psest_1040 0.67 -0.8
1,126,560 - Psest_1040 0.67 +0.8
1,126,560 - Psest_1040 0.67 +0.2
1,126,560 - Psest_1040 0.67 +0.3
1,126,560 - Psest_1040 0.67 -1.0
1,126,560 - Psest_1040 0.67 +0.0
1,126,560 - Psest_1040 0.67 +0.2
1,126,560 - Psest_1040 0.67 +0.1
1,126,619 + Psest_1040 0.73 +0.5
1,126,619 + Psest_1040 0.73 +0.5
1,126,662 + Psest_1040 0.77 -0.7
1,126,662 + Psest_1040 0.77 +0.8
1,126,718 + Psest_1040 0.83 -0.0
1,126,718 + Psest_1040 0.83 -0.0
1,126,718 + Psest_1040 0.83 -0.3
1,126,741 - Psest_1040 0.85 +0.4
1,126,786 + Psest_1040 0.90 -0.6
1,126,786 + Psest_1040 0.90 -0.2
1,126,787 - Psest_1040 0.90 -0.6

Or see this region's nucleotide sequence