| Condition | Gene | Description | Fitness | Cons. |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | Xcc-8004.213.1 | Putative OMR family iron-siderophore receptor precursor | -1.3 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.1353.1 | Type IV fimbriae expression regulatory protein PilR | -1.0 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.213.1 | Putative OMR family iron-siderophore receptor precursor | -1.5 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.2245.1 | Virulence regulator | -1.1 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.2759.1 | FIG002903: a protein of unknown function perhaps involved in purine metabolism | -1.1 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.3614.1 | hypothetical protein | -2.2 | Yes |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.3615.1 | Virulence protein | -2.6 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.3679.1 | Serine protease precursor MucD/AlgY associated with sigma factor RpoE | -1.9 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.3991.1 | FIG004453: protein YceG like | +1.1 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.4759.1 | protease IV | -2.0 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.513.1 | Outer membrane vitamin B12 receptor BtuB | -1.2 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | Xcc-8004.528.1 | hypothetical protein | +1.1 | |
| Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB | Xcc-8004.4877.1 | Membrane proteins related to metalloendopeptidases | -1.7 | |