Specific Phenotypes for Pseudomonas fluorescens FW300-N1B4 in stress experiments

Condition Gene Description Fitness Cons.
1-ethyl-3-methylimidazolium chloride Pf1N1B4_2223 FIG006231: RNA-binding protein -2.4  
1-ethyl-3-methylimidazolium chloride Pf1N1B4_2611 Excinuclease ABC subunit A -1.5  
5-Hydroxymethylfurfural Pf1N1B4_1871 Zinc uptake regulation protein ZUR -1.4  
5-Hydroxymethylfurfural Pf1N1B4_3264 Methyltransferase (EC 2.1.1.-) +3.0  
Aluminum chloride hydrate Pf1N1B4_1846 Protein tyrosine/serine phosphatase -2.1 Yes
Aluminum chloride hydrate Pf1N1B4_366 FIG00954136: hypothetical protein -1.3  
Aluminum chloride hydrate Pf1N1B4_3696 FIG00955360: hypothetical protein -2.8  
Aluminum chloride hydrate Pf1N1B4_382 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily -1.2 Yes
Aluminum chloride hydrate Pf1N1B4_723 two-component system sensor protein -2.7 Yes
Bacitracin Pf1N1B4_4666 Acriflavin resistance plasma membrane protein -1.8  
Benzethonium chloride Pf1N1B4_1142 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB -2.1  
Benzethonium chloride Pf1N1B4_2719 Sensor histidine kinase +1.3  
Benzethonium chloride Pf1N1B4_3147 Putative NADPH-quinone reductase (modulator of drug activity B) -1.9  
Benzethonium chloride Pf1N1B4_3361 Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor -1.4  
Benzethonium chloride Pf1N1B4_3667 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.6  
Benzethonium chloride Pf1N1B4_3668 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.6  
Benzethonium chloride Pf1N1B4_389 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -2.3  
Carbenicillin disodium salt Pf1N1B4_1417 NAD(P)HX epimerase / NAD(P)HX dehydratase -1.8  
Carbenicillin disodium salt Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG -1.6 Yes
Carbenicillin disodium salt Pf1N1B4_1509 Putative histidine ammonia-lyase protein -1.0 Yes
Carbenicillin disodium salt Pf1N1B4_1868 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -1.8  
Carbenicillin disodium salt Pf1N1B4_2111 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -1.1  
Carbenicillin disodium salt Pf1N1B4_2131 hypothetical protein +1.7  
Carbenicillin disodium salt Pf1N1B4_2391 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) -1.2 Yes
Carbenicillin disodium salt Pf1N1B4_2436 FIG00953563: hypothetical protein +1.6  
Carbenicillin disodium salt Pf1N1B4_2611 Excinuclease ABC subunit A -1.8  
Carbenicillin disodium salt Pf1N1B4_2635 hypothetical protein +1.9  
Carbenicillin disodium salt Pf1N1B4_3197 OmpA family protein -2.0  
Carbenicillin disodium salt Pf1N1B4_3415 Transcriptional regulator, TetR family +2.5  
Carbenicillin disodium salt Pf1N1B4_3846 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) -2.1 Yes
Carbenicillin disodium salt Pf1N1B4_389 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) +2.3  
Carbenicillin disodium salt Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) -3.0 Yes
Carbenicillin disodium salt Pf1N1B4_447 FIG004453: protein YceG like -1.8  
Carbenicillin disodium salt Pf1N1B4_668 Exodeoxyribonuclease I (EC 3.1.11.1) -1.2  
Carbenicillin disodium salt Pf1N1B4_73 Beta-lactamase (EC 3.5.2.6) -1.9 Yes
Choline Lysine Pf1N1B4_2637 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) +1.5  
Choline Lysine Pf1N1B4_4858 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY +1.5  
Choline chloride Pf1N1B4_1417 NAD(P)HX epimerase / NAD(P)HX dehydratase +1.4  
Choline chloride Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG +1.2  
Choline chloride Pf1N1B4_2416 Choline dehydrogenase (EC 1.1.99.1) -1.6 Yes
Choline chloride Pf1N1B4_2611 Excinuclease ABC subunit A -1.6  
Choline chloride Pf1N1B4_2694 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) +1.5  
Choline chloride Pf1N1B4_447 FIG004453: protein YceG like +1.3  
Cisplatin Pf1N1B4_1927 DNA recombination and repair protein RecF -2.6 Yes
Cisplatin Pf1N1B4_2611 Excinuclease ABC subunit A -2.5 Yes
Cisplatin Pf1N1B4_2694 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) +1.5  
Cisplatin Pf1N1B4_2887 Chromosome segregation ATPases -1.1  
Cisplatin Pf1N1B4_293 hypothetical protein +1.4  
Cisplatin Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) +1.5  
Cisplatin Pf1N1B4_3752 Aspartyl aminopeptidase -1.4 Yes
Cisplatin Pf1N1B4_3916 Transcription-repair coupling factor -2.3 Yes
Cisplatin Pf1N1B4_4934 DNA damage response nuclease (from data) -2.2 Yes
Cisplatin Pf1N1B4_4935 DinG family ATP-dependent helicase CPE1197 -1.8 Yes
Cisplatin Pf1N1B4_5450 Error-prone, lesion bypass DNA polymerase V (UmuC) -1.7 Yes
Cisplatin Pf1N1B4_5500 hypothetical protein +1.2  
Cisplatin Pf1N1B4_6039 Endonuclease I precursor (EC 3.1.21.1) -1.3 Yes
Cobalt chloride hexahydrate Pf1N1B4_1013 L-serine ammonia-lyase (EC 4.3.1.17) (from data) +2.2 Yes
Cobalt chloride hexahydrate Pf1N1B4_2386 cytosolic long-chain acyl-CoA thioester hydrolase family protein -2.2 Yes
Cobalt chloride hexahydrate Pf1N1B4_3454 Mg/Co/Ni transporter MgtE / CBS domain +8.6 Yes
D-Cycloserine Pf1N1B4_2721 AMP nucleosidase (EC 3.2.2.4) -2.1  
Doxycycline hyclate Pf1N1B4_1096 Septum formation protein Maf +1.5  
Doxycycline hyclate Pf1N1B4_1142 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB -2.1  
Doxycycline hyclate Pf1N1B4_1181 UPF0125 protein yfjF +1.7 Yes
Doxycycline hyclate Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) -1.7  
Doxycycline hyclate Pf1N1B4_149 Pyoverdine sidechain non-ribosomal peptide synthetase PvdD +1.2  
Doxycycline hyclate Pf1N1B4_1509 Putative histidine ammonia-lyase protein -1.1  
Doxycycline hyclate Pf1N1B4_1669 ADP compounds hydrolase NudE (EC 3.6.1.-) +1.2  
Doxycycline hyclate Pf1N1B4_2206 FIG139438: lipoprotein B +2.5  
Doxycycline hyclate Pf1N1B4_3147 Putative NADPH-quinone reductase (modulator of drug activity B) -1.9  
Doxycycline hyclate Pf1N1B4_3264 Methyltransferase (EC 2.1.1.-) +6.0 Yes
Doxycycline hyclate Pf1N1B4_3415 Transcriptional regulator, TetR family +2.4  
Doxycycline hyclate Pf1N1B4_3566 Phenylalanine-4-hydroxylase (EC 1.14.16.1) -1.9  
Doxycycline hyclate Pf1N1B4_366 FIG00954136: hypothetical protein +1.4  
Doxycycline hyclate Pf1N1B4_3667 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -3.3 Yes
Doxycycline hyclate Pf1N1B4_3668 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.8 Yes
Doxycycline hyclate Pf1N1B4_3846 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) +1.0  
Doxycycline hyclate Pf1N1B4_389 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -3.3  
Doxycycline hyclate Pf1N1B4_3916 Transcription-repair coupling factor +2.1  
Doxycycline hyclate Pf1N1B4_5355 hypothetical protein +1.4  
Doxycycline hyclate Pf1N1B4_546 FMN-dependent NADH-azoreductase +1.2  
Doxycycline hyclate Pf1N1B4_573 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) +1.7  
Doxycycline hyclate Pf1N1B4_5948 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) +2.1  
Doxycycline hyclate Pf1N1B4_723 two-component system sensor protein -2.0 Yes
Fusidic acid sodium salt Pf1N1B4_1013 L-serine ammonia-lyase (EC 4.3.1.17) (from data) -1.5  
Fusidic acid sodium salt Pf1N1B4_1096 Septum formation protein Maf +1.6  
Fusidic acid sodium salt Pf1N1B4_1863 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone +1.1  
Fusidic acid sodium salt Pf1N1B4_2050 Rubredoxin-NAD(+) reductase (EC 1.18.1.1) +1.1  
Fusidic acid sodium salt Pf1N1B4_2206 FIG139438: lipoprotein B +1.8  
Fusidic acid sodium salt Pf1N1B4_2223 FIG006231: RNA-binding protein -1.8  
Fusidic acid sodium salt Pf1N1B4_2721 AMP nucleosidase (EC 3.2.2.4) -1.9  
Fusidic acid sodium salt Pf1N1B4_2755 Xanthine/uracil/thiamine/ascorbate permease family protein +1.1  
Fusidic acid sodium salt Pf1N1B4_3117 DNA mismatch repair protein MutS +1.2 Yes
Fusidic acid sodium salt Pf1N1B4_3170 Peptide chain release factor RF-3 -1.2  
Fusidic acid sodium salt Pf1N1B4_3361 Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor +1.3  
Fusidic acid sodium salt Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) -2.4 Yes
Fusidic acid sodium salt Pf1N1B4_3667 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -3.0  
Fusidic acid sodium salt Pf1N1B4_3668 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.7  
Fusidic acid sodium salt Pf1N1B4_3684 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) +2.4  
Fusidic acid sodium salt Pf1N1B4_3942 Murein-DD-endopeptidase (EC 3.4.99.-) +1.6  
Fusidic acid sodium salt Pf1N1B4_431 hypothetical protein +1.6  
Fusidic acid sodium salt Pf1N1B4_4772 RND efflux system, inner membrane transporter CmeB +2.1 Yes
Fusidic acid sodium salt Pf1N1B4_573 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) +1.6  
Fusidic acid sodium salt Pf1N1B4_5938 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) +1.5  
Fusidic acid sodium salt Pf1N1B4_813 hypothetical protein -1.4  
Gentamicin sulfate salt Pf1N1B4_1661 Agmatine deiminase (EC 3.5.3.12) -2.1  
Nalidixic acid sodium salt Pf1N1B4_3363 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase -1.2  
Nalidixic acid sodium salt Pf1N1B4_3667 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.4  
Nalidixic acid sodium salt Pf1N1B4_3668 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.3  
Nalidixic acid sodium salt Pf1N1B4_389 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -1.7  
Paraquat dichloride Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) -2.2 Yes
Paraquat dichloride Pf1N1B4_1689 High-affinity choline uptake protein BetT +3.4 Yes
Paraquat dichloride Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) +2.5 Yes
Paraquat dichloride Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) +2.4 Yes
Paraquat dichloride Pf1N1B4_2130 FIG00953403: hypothetical protein +5.3 Yes
Paraquat dichloride Pf1N1B4_2131 hypothetical protein +7.3  
Paraquat dichloride Pf1N1B4_2132 Aldehyde dehydrogenase (EC 1.2.1.3) +5.8 Yes
Paraquat dichloride Pf1N1B4_2133 Major facilitator family transporter -2.8 Yes
Paraquat dichloride Pf1N1B4_2194 Glutathione-regulated potassium-efflux system ATP-binding protein +1.2 Yes
Paraquat dichloride Pf1N1B4_2218 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like -1.5  
Paraquat dichloride Pf1N1B4_2419 High-affinity choline uptake protein BetT +5.7 Yes
Paraquat dichloride Pf1N1B4_3454 Mg/Co/Ni transporter MgtE / CBS domain +1.7  
Paraquat dichloride Pf1N1B4_4054 ATP-dependent Clp protease adaptor protein ClpS +2.4  
Paraquat dichloride Pf1N1B4_5708 Transcriptional regulator, TetR family +1.9  
Rifampicin Pf1N1B4_1142 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB -1.7  
Rifampicin Pf1N1B4_1445 lipoprotein, putative -1.3  
Rifampicin Pf1N1B4_1509 Putative histidine ammonia-lyase protein -1.1  
Rifampicin Pf1N1B4_3147 Putative NADPH-quinone reductase (modulator of drug activity B) -2.7  
Rifampicin Pf1N1B4_3345 Ribonuclease D (EC 3.1.26.3) -1.2  
Rifampicin Pf1N1B4_3667 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -1.9  
Rifampicin Pf1N1B4_3668 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.2  
Rifampicin Pf1N1B4_3696 FIG00955360: hypothetical protein -1.7  
Rifampicin Pf1N1B4_389 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -2.1  
Rifampicin Pf1N1B4_4643 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -1.3  
Sodium Chloride Pf1N1B4_2416 Choline dehydrogenase (EC 1.1.99.1) -2.2 Yes
Sodium Chlorite Pf1N1B4_1628 MFS permease +1.6 Yes
Sodium Chlorite Pf1N1B4_1863 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone -2.1  
Sodium Chlorite Pf1N1B4_2233 Ferric iron ABC transporter, permease protein -1.8 Yes
Sodium Chlorite Pf1N1B4_3566 Phenylalanine-4-hydroxylase (EC 1.14.16.1) -2.4 Yes
Sodium Chlorite Pf1N1B4_3567 Phenylalanine hydroxylase transcriptional activator PhhR -1.7 Yes
Sodium Chlorite Pf1N1B4_828 Multicopper oxidase -2.3  
Sodium nitrate Pf1N1B4_211 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase +1.3  
Sodium nitrate Pf1N1B4_2354 twitching motility protein PilH +1.2  
Sodium nitrate Pf1N1B4_2544 Phosphoglycolate phosphatase (EC 3.1.3.18) +1.3 Yes
Sodium nitrate Pf1N1B4_293 hypothetical protein +1.4  
Sodium nitrate Pf1N1B4_295 Arylesterase precursor (EC 3.1.1.2) +1.3  
Sodium nitrate Pf1N1B4_3345 Ribonuclease D (EC 3.1.26.3) +1.4  
Sodium nitrate Pf1N1B4_3482 outer membrane protein H1 +1.3 Yes
Sodium nitrate Pf1N1B4_3827 Esterase/lipase/thioesterase family protein +1.3  
Sodium nitrate Pf1N1B4_3829 Magnesium and cobalt transport protein CorA +1.6  
Sodium nitrate Pf1N1B4_3834 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) +1.5  
Sodium nitrate Pf1N1B4_4863 Outer membrane protein OprN +1.6  
Sodium nitrate Pf1N1B4_646 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases +1.3  
Sodium nitrate Pf1N1B4_723 two-component system sensor protein +1.6  
Sodium nitrite Pf1N1B4_1002 LysR family transcriptional regulator QseA -1.3  
Sodium nitrite Pf1N1B4_2386 cytosolic long-chain acyl-CoA thioester hydrolase family protein -2.4  
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) -1.9  
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_1375 Mannose-6-phosphate isomerase (EC 5.3.1.8) -1.7 Yes
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_1417 NAD(P)HX epimerase / NAD(P)HX dehydratase +1.3  
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_3482 outer membrane protein H1 -1.2  
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_3876 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) +1.7  
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_4772 RND efflux system, inner membrane transporter CmeB -3.1 Yes
Spectinomycin dihydrochloride pentahydrate Pf1N1B4_5010 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) -1.5  
Tetracycline hydrochloride Pf1N1B4_3264 Methyltransferase (EC 2.1.1.-) +3.1 Yes
Thallium(I) acetate Pf1N1B4_2386 cytosolic long-chain acyl-CoA thioester hydrolase family protein -2.6  
Thallium(I) acetate Pf1N1B4_2416 Choline dehydrogenase (EC 1.1.99.1) -2.3 Yes
Thallium(I) acetate Pf1N1B4_2418 HTH-type transcriptional regulator BetI -2.1 Yes
Thallium(I) acetate Pf1N1B4_2419 High-affinity choline uptake protein BetT +1.2 Yes
Thallium(I) acetate Pf1N1B4_2764 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) -2.7 Yes
Thallium(I) acetate Pf1N1B4_3566 Phenylalanine-4-hydroxylase (EC 1.14.16.1) -2.0  
copper (II) chloride dihydrate Pf1N1B4_211 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase -1.2  
copper (II) chloride dihydrate Pf1N1B4_2291 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) -3.2 Yes
copper (II) chloride dihydrate Pf1N1B4_3454 Mg/Co/Ni transporter MgtE / CBS domain +1.6  
copper (II) chloride dihydrate Pf1N1B4_44 Multicopper oxidase -1.2 Yes
copper (II) chloride dihydrate Pf1N1B4_4728 Na+/H+ antiporter NhaB -1.7  
methylglyoxal Pf1N1B4_2611 Excinuclease ABC subunit A -1.7 Yes
methylglyoxal Pf1N1B4_2721 AMP nucleosidase (EC 3.2.2.4) -2.7 Yes
methylglyoxal Pf1N1B4_3667 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -2.1 Yes
methylglyoxal Pf1N1B4_3668 Nucleoside ABC transporter, periplasmic nucleoside-binding protein -1.9 Yes
methylglyoxal Pf1N1B4_367 Fumarate hydratase class II (EC 4.2.1.2) +1.2  
methylglyoxal Pf1N1B4_3824 FIG137360: hypothetical protein +1.7  
methylglyoxal Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase -1.8 Yes
sodium fluoride Pf1N1B4_2665 Transcriptional regulator -1.3 Yes
sodium fluoride Pf1N1B4_3900 Universal stress protein family COG0589 +1.5  
sodium fluoride Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase -2.0 Yes