Specific Phenotypes for Bifidobacterium breve UCC2003 in stress experiments

Condition Gene Description Fitness Cons.
Amikacin disulfate salt BBR_RS10715 tRNA-guanine(34) transglycosylase -1.0  
Amikacin disulfate salt BBR_RS13015 peptide deformylase -1.4  
Amikacin disulfate salt BBR_RS14100 UPF0182 family protein -1.8  
Amikacin disulfate salt BBR_RS14605 ABC transporter permease -1.3  
Amikacin disulfate salt BBR_RS16585 BAX inhibitor (BI)-1/YccA family protein -2.5  
Amoxicillin BBR_RS18645 DNA-binding response regulator +1.4  
Aztreonam BBR_RS13430 hypothetical protein +1.1  
Aztreonam BBR_RS18645 DNA-binding response regulator +2.0  
Bacitracin BBR_RS13270 ABC transporter ATP-binding protein +1.6  
Bacitracin BBR_RS13275 hypothetical protein +1.9  
Bacitracin BBR_RS18480 LacI family DNA-binding transcriptional regulator -1.5  
Bacitracin BBR_RS20240 hypothetical protein -1.9  
Benzethonium chloride BBR_RS18130 glucokinase -1.8  
Bicyclomycin BBR_RS11925 hypothetical protein -1.2  
Bicyclomycin BBR_RS11935 hypothetical protein -1.2  
Bicyclomycin BBR_RS12865 S9 family peptidase variable  
Bicyclomycin BBR_RS13430 hypothetical protein variable  
Bicyclomycin BBR_RS13435 hypothetical protein +1.4  
Bicyclomycin BBR_RS13845 dipeptidase -1.3  
Bicyclomycin BBR_RS14485 DUF3000 domain-containing protein +2.2  
Bicyclomycin BBR_RS15240 LacI family DNA-binding transcriptional regulator +3.2  
Bicyclomycin BBR_RS17335 DUF3516 domain-containing protein +1.2  
Bicyclomycin BBR_RS18130 glucokinase +8.0  
Bicyclomycin BBR_RS18135 hypothetical protein variable  
Bicyclomycin BBR_RS18470 MFS transporter +8.8  
Bicyclomycin BBR_RS18475 DUF4981 domain-containing protein +1.6  
Bicyclomycin BBR_RS18645 DNA-binding response regulator +1.5  
Bicyclomycin BBR_RS18985 4-alpha-glucanotransferase +2.9  
Bicyclomycin BBR_RS20470 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG variable  
Bicyclomycin BBR_RS20500 hypothetical protein variable  
Carbenicillin disodium salt BBR_RS10305 Conserved hypothetical membrane spanning protein, VanZ family -1.1  
Carbenicillin disodium salt BBR_RS18645 DNA-binding response regulator +1.8  
Cefsulodin sodium salt hydrate BBR_RS19440 polysaccharide deacetylase family protein +1.3  
Cerulenin BBR_RS12115 hypothetical protein +2.1  
Cerulenin BBR_RS12860 DUF2183 domain-containing protein -1.6  
Cerulenin BBR_RS13435 hypothetical protein +1.2  
Cetomacrogol 1000 BBR_RS12115 hypothetical protein +8.7  
Cetomacrogol 1000 BBR_RS12860 DUF2183 domain-containing protein variable  
Cetomacrogol 1000 BBR_RS13430 hypothetical protein +1.2  
Cetomacrogol 1000 BBR_RS14600 ABC transporter ATP-binding protein -1.2  
Cetomacrogol 1000 BBR_RS14605 ABC transporter permease -1.8  
Cetomacrogol 1000 BBR_RS16140 long-chain fatty acid--CoA ligase -2.2  
Cetomacrogol 1000 BBR_RS18130 glucokinase variable  
Cetomacrogol 1000 BBR_RS18985 4-alpha-glucanotransferase +2.0  
Choline chloride BBR_RS10715 tRNA-guanine(34) transglycosylase -1.1  
Choline chloride BBR_RS10765 hypothetical protein -1.6  
Choline chloride BBR_RS10770 CrcB family protein -1.8  
Choline chloride BBR_RS12325 type 1 glutamine amidotransferase -1.4  
Choline chloride BBR_RS12860 DUF2183 domain-containing protein -1.9  
Choline chloride BBR_RS13780 ABC transporter permease -1.4  
Choline chloride BBR_RS13785 myristoyl transferase -1.4  
Choline chloride BBR_RS13845 dipeptidase -1.9  
Choline chloride BBR_RS17995 citrate synthase -1.5  
Ciprofloxacin Hydrochloride BBR_RS18470 MFS transporter -3.2  
Clotrimazole BBR_RS12920 glycine synthesis protein GlyXL (from data) -1.3  
D-Cycloserine BBR_RS15220 trimeric intracellular cation channel family protein +1.2  
D-Cycloserine BBR_RS15560 aminotransferase class V-fold PLP-dependent enzyme +1.8 Yes
D-Cycloserine BBR_RS20040 amino acid permease -1.3  
Daptomycin BBR_RS18645 DNA-binding response regulator -3.8  
Dimetridazole BBR_RS10560 hypothetical protein -2.8  
Dimetridazole BBR_RS14030 DNA repair protein RecN -1.4  
Dimetridazole BBR_RS14115 transcription-repair coupling factor -1.1 Yes
Dimetridazole BBR_RS15510 excinuclease ABC subunit UvrA -1.9  
Dimetridazole BBR_RS15515 excinuclease ABC subunit UvrC -2.2  
Dimetridazole BBR_RS19295 ATP-dependent DNA helicase RecG -2.3  
EDTA BBR_RS11440 FMN-binding protein -1.9  
EDTA BBR_RS13355 ABC transporter substrate-binding protein -6.0  
EDTA BBR_RS19930 FAD:protein FMN transferase -1.7  
Flavomycin BBR_RS18645 DNA-binding response regulator +1.6  
Gentamicin sulfate salt BBR_RS16315 hypothetical protein +1.7  
Gentamicin sulfate salt BBR_RS18470 MFS transporter +1.5  
Gramicidin BBR_RS12180 DUF2974 domain-containing protein -2.0  
Gramicidin BBR_RS12435 ABC transporter ATP-binding protein -3.9  
Gramicidin BBR_RS12440 Permease of ABC transporter system -6.1  
Gramicidin BBR_RS12860 DUF2183 domain-containing protein -1.3  
Gramicidin BBR_RS14100 UPF0182 family protein -1.3  
Gramicidin BBR_RS14600 ABC transporter ATP-binding protein -1.1  
Gramicidin BBR_RS14605 ABC transporter permease -1.1  
Gramicidin BBR_RS16660 ABC transporter ATP-binding protein -1.4  
Gramicidin BBR_RS16665 Permease of ABC transporter system -1.5  
Gramicidin BBR_RS17960 Ppx/GppA family phosphatase -1.9  
Gramicidin BBR_RS18200 hypothetical protein -1.9  
Gramicidin BBR_RS18205 ABC transporter ATP-binding protein -1.9  
Gramicidin BBR_RS19715 DUF4190 domain-containing protein -1.2  
Gramicidin BBR_RS20695 hypothetical protein -5.6  
Irgasan BBR_RS12920 glycine synthesis protein GlyXL (from data) -1.8  
Isovaleric acid BBR_RS20215 sodium:proton antiporter -1.0  
Kanamycin sulfate BBR_RS10715 tRNA-guanine(34) transglycosylase -1.9  
Kanamycin sulfate BBR_RS13780 ABC transporter permease -1.7  
Kanamycin sulfate BBR_RS13785 myristoyl transferase -1.8  
Kanamycin sulfate BBR_RS14010 TlyA family rRNA (cytidine-2'-O)-methyltransferase +1.7  
Kanamycin sulfate BBR_RS14100 UPF0182 family protein -2.5  
Kanamycin sulfate BBR_RS14600 ABC transporter ATP-binding protein -1.5  
Kanamycin sulfate BBR_RS14605 ABC transporter permease -1.9  
Kanamycin sulfate BBR_RS16585 BAX inhibitor (BI)-1/YccA family protein -3.0  
Kanamycin sulfate BBR_RS17005 methyltransferase domain-containing protein +1.5  
Kanamycin sulfate BBR_RS19650 NUDIX hydrolase -1.2  
Kanamycin sulfate BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -1.9  
Levofloxacin BBR_RS18470 MFS transporter -2.0  
Lincomycin hydrochloride BBR_RS18285 ABC transporter ATP-binding protein -4.5  
Lincomycin hydrochloride BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -1.6  
Linezolid BBR_RS17335 DUF3516 domain-containing protein -1.0  
Lysozyme BBR_RS18645 DNA-binding response regulator -2.3  
Metronidazole BBR_RS10560 hypothetical protein -5.1  
Metronidazole BBR_RS14030 DNA repair protein RecN -1.7  
Metronidazole BBR_RS14115 transcription-repair coupling factor -1.6  
Metronidazole BBR_RS14535 pyridoxal phosphate-dependent aminotransferase +1.4  
Metronidazole BBR_RS15510 excinuclease ABC subunit UvrA -3.2  
Metronidazole BBR_RS15515 excinuclease ABC subunit UvrC -3.3  
Metronidazole BBR_RS15590 molecular chaperone DnaJ -2.1  
Metronidazole BBR_RS18645 DNA-binding response regulator +2.3  
Metronidazole BBR_RS19045 DNA polymerase IV -1.5  
Metronidazole BBR_RS19295 ATP-dependent DNA helicase RecG -3.4  
Moxifloxacin BBR_RS11670 DNA recombination protein RmuC -1.3  
Moxifloxacin BBR_RS14030 DNA repair protein RecN -2.9  
Moxifloxacin BBR_RS14115 transcription-repair coupling factor -1.1 Yes
Moxifloxacin BBR_RS17985 helicase -4.7  
Moxifloxacin BBR_RS18740 DNA repair protein RadA -2.2  
Moxifloxacin BBR_RS19295 ATP-dependent DNA helicase RecG -1.9  
Neomycin trisulfate salt hydrate BBR_RS10715 tRNA-guanine(34) transglycosylase -1.0  
Neomycin trisulfate salt hydrate BBR_RS14100 UPF0182 family protein -1.9  
Neomycin trisulfate salt hydrate BBR_RS14600 ABC transporter ATP-binding protein -1.4  
Neomycin trisulfate salt hydrate BBR_RS14605 ABC transporter permease -1.8  
Neomycin trisulfate salt hydrate BBR_RS16585 BAX inhibitor (BI)-1/YccA family protein -2.2  
Nisin from Lactococcus lactis BBR_RS10765 hypothetical protein +1.4  
Nisin from Lactococcus lactis BBR_RS10770 CrcB family protein +1.5  
Nisin from Lactococcus lactis BBR_RS15970 hypothetical protein -6.1  
Nisin from Lactococcus lactis BBR_RS15975 hypothetical protein -6.9  
Nisin from Lactococcus lactis BBR_RS15980 Lantibiotic transport ATP-binding protein -6.1  
Nisin from Lactococcus lactis BBR_RS19440 polysaccharide deacetylase family protein variable  
Nitrofurantoin BBR_RS10560 hypothetical protein -4.9  
Nitrofurantoin BBR_RS11200 LacI family transcriptional regulator -1.1  
Nitrofurantoin BBR_RS13195 pyridoxal 5'-phosphate synthase lyase subunit PdxS +1.4  
Nitrofurantoin BBR_RS14115 transcription-repair coupling factor -2.5  
Nitrofurantoin BBR_RS14535 pyridoxal phosphate-dependent aminotransferase +1.2  
Nitrofurantoin BBR_RS15510 excinuclease ABC subunit UvrA -5.0 Yes
Nitrofurantoin BBR_RS15515 excinuclease ABC subunit UvrC -4.9  
Nitrofurantoin BBR_RS15590 molecular chaperone DnaJ -1.8  
Nitrofurantoin BBR_RS19295 ATP-dependent DNA helicase RecG -2.8  
Nitrofurantoin BBR_RS20090 DUF4235 domain-containing protein +1.3  
Nitrofurantoin BBR_RS20105 YhgE/Pip domain-containing protein -1.2  
Nitrofurazone BBR_RS10560 hypothetical protein -3.1  
Nitrofurazone BBR_RS14115 transcription-repair coupling factor -1.2  
Nitrofurazone BBR_RS15510 excinuclease ABC subunit UvrA -4.9  
Nitrofurazone BBR_RS15515 excinuclease ABC subunit UvrC -4.5  
Nitrofurazone BBR_RS19295 ATP-dependent DNA helicase RecG -1.5  
Novobiocin sodium salt BBR_RS16745 segregation/condensation protein A -1.1  
Penicillin g BBR_RS10305 Conserved hypothetical membrane spanning protein, VanZ family -1.3  
Penicillin g BBR_RS10725 Lead, cadmium, zinc and mercury transporting ATPase +1.3  
Penicillin g BBR_RS11445 TetR/AcrR family transcriptional regulator -1.5  
Penicillin g BBR_RS17475 cold-shock protein +1.4  
Penicillin g BBR_RS18640 PspC domain-containing protein +1.6  
Penicillin g BBR_RS18645 DNA-binding response regulator +2.0  
Penicillin g BBR_RS19440 polysaccharide deacetylase family protein +1.1  
Phosphomycin disodium salt BBR_RS18470 MFS transporter -1.8  
Potassium acetate BBR_RS10715 tRNA-guanine(34) transglycosylase -1.0  
Potassium acetate BBR_RS12055 thioredoxin -1.6  
Potassium acetate BBR_RS12115 hypothetical protein +4.4  
Potassium acetate BBR_RS12180 DUF2974 domain-containing protein +2.6  
Potassium acetate BBR_RS13430 hypothetical protein +3.2  
Potassium acetate BBR_RS13435 hypothetical protein +3.0  
Potassium acetate BBR_RS13845 dipeptidase -1.4  
Potassium acetate BBR_RS16495 serine/threonine-protein kinase variable  
Potassium acetate BBR_RS18130 glucokinase +2.9  
Potassium acetate BBR_RS18985 4-alpha-glucanotransferase +2.6  
Potassium iodide BBR_RS12860 DUF2183 domain-containing protein -1.4  
Pyrimethamine BBR_RS15410 methylenetetrahydrofolate reductase [NAD(P)H] +1.1  
Ramoplanin BBR_RS19515 ABC transporter ATP-binding protein -1.2  
Rifampicin BBR_RS18470 MFS transporter +1.8  
Serine hydroxamate BBR_RS13195 pyridoxal 5'-phosphate synthase lyase subunit PdxS -1.4  
Serine hydroxamate BBR_RS13200 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -1.6  
Serine hydroxamate BBR_RS13205 PLP-dependent aminotransferase family protein -1.9  
Serine hydroxamate BBR_RS20040 amino acid permease -1.8  
Sodium Chloride BBR_RS10715 tRNA-guanine(34) transglycosylase -1.1  
Sodium Chloride BBR_RS12860 DUF2183 domain-containing protein -2.3  
Sodium D,L-Lactate BBR_RS12115 hypothetical protein +1.4  
Sodium D,L-Lactate BBR_RS13430 hypothetical protein +1.4  
Sodium D,L-Lactate BBR_RS13435 hypothetical protein +1.6  
Sodium D,L-Lactate BBR_RS16105 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -2.0  
Sodium D,L-Lactate BBR_RS20215 sodium:proton antiporter -3.5  
Sodium nitrite BBR_RS14115 transcription-repair coupling factor -1.5  
Sodium nitrite BBR_RS16215 restriction enzyme +1.5  
Spiramycin BBR_RS16105 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN +2.4 Yes
Spiramycin BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -1.4  
Streptomycin sulfate salt BBR_RS10715 tRNA-guanine(34) transglycosylase -2.1  
Streptomycin sulfate salt BBR_RS10765 hypothetical protein +1.2  
Streptomycin sulfate salt BBR_RS10770 CrcB family protein +1.6  
Streptomycin sulfate salt BBR_RS11520 P-II family nitrogen regulator +1.4  
Streptomycin sulfate salt BBR_RS12055 thioredoxin +4.5  
Streptomycin sulfate salt BBR_RS12115 hypothetical protein +1.9  
Streptomycin sulfate salt BBR_RS12850 NAD(+) diphosphatase +1.1  
Streptomycin sulfate salt BBR_RS13780 ABC transporter permease -3.4  
Streptomycin sulfate salt BBR_RS13785 myristoyl transferase -2.1  
Streptomycin sulfate salt BBR_RS14010 TlyA family rRNA (cytidine-2'-O)-methyltransferase +2.2 Yes
Streptomycin sulfate salt BBR_RS14100 UPF0182 family protein -2.0  
Streptomycin sulfate salt BBR_RS14605 ABC transporter permease -1.5  
Streptomycin sulfate salt BBR_RS14860 MFS transporter +4.9  
Streptomycin sulfate salt BBR_RS16140 long-chain fatty acid--CoA ligase -1.6  
Streptomycin sulfate salt BBR_RS16585 BAX inhibitor (BI)-1/YccA family protein -2.0  
Streptomycin sulfate salt BBR_RS17005 methyltransferase domain-containing protein +2.9  
Streptomycin sulfate salt BBR_RS18130 glucokinase +1.4  
Streptomycin sulfate salt BBR_RS18470 MFS transporter +1.7  
Streptomycin sulfate salt BBR_RS18750 pseudouridine synthase +2.1  
Streptomycin sulfate salt BBR_RS19685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH +1.7  
Streptomycin sulfate salt BBR_RS19695 tRNA glutamyl-Q(34) synthetase GluQRS -1.3  
Streptomycin sulfate salt BBR_RS20090 DUF4235 domain-containing protein +1.1  
Streptomycin sulfate salt BBR_RS20470 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG +5.9  
Sulfamethizole BBR_RS15405 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -1.2  
Sulfamethizole BBR_RS17315 MFS transporter +1.1  
Sulfamonomethoxine BBR_RS15405 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -1.2  
Sulfamonomethoxine BBR_RS17315 MFS transporter +1.0  
Tiamulin BBR_RS10725 Lead, cadmium, zinc and mercury transporting ATPase -1.2  
Tiamulin BBR_RS18285 ABC transporter ATP-binding protein -6.2  
Tiamulin BBR_RS18470 MFS transporter +1.5  
Tiamulin BBR_RS18985 4-alpha-glucanotransferase +1.4  
Tiamulin BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -1.6  
Ticarcillin disodium salt BBR_RS10305 Conserved hypothetical membrane spanning protein, VanZ family -1.4  
Ticarcillin disodium salt BBR_RS10725 Lead, cadmium, zinc and mercury transporting ATPase +1.5  
Ticarcillin disodium salt BBR_RS11635 hypothetical protein -1.3  
Ticarcillin disodium salt BBR_RS16740 SMC-Scp complex subunit ScpB -1.3  
Ticarcillin disodium salt BBR_RS17475 cold-shock protein +2.0  
Ticarcillin disodium salt BBR_RS18640 PspC domain-containing protein +2.0  
Ticarcillin disodium salt BBR_RS18645 DNA-binding response regulator +2.4  
Ticarcillin disodium salt BBR_RS19440 polysaccharide deacetylase family protein +1.1  
Trimethoprim BBR_RS15410 methylenetetrahydrofolate reductase [NAD(P)H] +1.4  
Trimethoprim BBR_RS15640 HIT domain-containing protein +1.8  
Trimethoprim BBR_RS20240 hypothetical protein +1.3  
Vancomycin Hydrochloride from Streptomyces orientalis BBR_RS18645 DNA-binding response regulator -2.5  
Warfarin BBR_RS12860 DUF2183 domain-containing protein -3.8  
Warfarin BBR_RS16140 long-chain fatty acid--CoA ligase -2.8