Specific Phenotypes for Escherichia coli Nissle 1917 in phage experiments

Condition Gene Description Fitness Cons.
MOI 10 ECOLIN_RS00590 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD +1.5  
MOI 10 ECOLIN_RS02345 pyrroline-5-carboxylate reductase -2.2  
MOI 10 ECOLIN_RS02490 nucleoside-specific channel-forming protein Tsx +1.4  
MOI 10 ECOLIN_RS02575 heme o synthase -1.9  
MOI 10 ECOLIN_RS02590 cytochrome o ubiquinol oxidase subunit I -1.7  
MOI 10 ECOLIN_RS03400 transcription antiterminator/RNA stability regulator CspE variable  
MOI 10 ECOLIN_RS03730 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) -1.4  
MOI 10 ECOLIN_RS06225 flagellar hook assembly protein FlgD +1.7  
MOI 10 ECOLIN_RS06335 cell division protein YceG +2.7  
MOI 10 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase -1.6  
MOI 10 ECOLIN_RS12935 porin OmpC +2.6  
MOI 10 ECOLIN_RS13160 signal transduction protein PmrD variable  
MOI 10 ECOLIN_RS14140 outer membrane protein assembly factor BamC +2.3 Yes
MOI 10 ECOLIN_RS14185 uracil phosphoribosyltransferase +1.3  
MOI 10 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR +1.4  
MOI 10 ECOLIN_RS14935 glycine betaine/L-proline ABC transporter permease ProW variable Yes
MOI 10 ECOLIN_RS14940 glycine betaine/L-proline ABC transporter substrate-binding protein ProX variable  
MOI 10 ECOLIN_RS15875 phosphoenolpyruvate--protein phosphotransferase +1.4  
MOI 10 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ -1.1  
MOI 10 ECOLIN_RS17845 DedA family general envelope maintenance protein YqjA -1.7 Yes
MOI 10 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB variable Yes
MOI 10 ECOLIN_RS18365 BolA family iron metabolism protein IbaG -1.4  
MOI 10 ECOLIN_RS19465 Tex family protein variable  
MOI 10 ECOLIN_RS19515 maltodextrin phosphorylase variable Yes
MOI 10 ECOLIN_RS19520 HTH-type transcriptional regulator MalT variable Yes
MOI 10 ECOLIN_RS20295 kdo(2)-lipid A phosphoethanolamine 7''-transferase +1.9 Yes
MOI 10 ECOLIN_RS21595 FadR/GntR family transcriptional regulator -1.2  
MOI 10 ECOLIN_RS21885 DNA helicase II -1.7  
MOI 10 ECOLIN_RS23305 maltoporin LamB +1.4 Yes
MOI 10 ECOLIN_RS24520 gamma-glutamylcyclotransferase +1.6