Specific Phenotypes for Escherichia coli Nissle 1917 in phage experiments

Condition	Gene	Description	Fitness	Cons.
MOI 10	ECOLIN_RS02490	nucleoside-specific channel-forming protein Tsx	variable	Yes
MOI 10	ECOLIN_RS02810	molecular chaperone HtpG	variable	Yes
MOI 10	ECOLIN_RS03730	phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)	-1.3
MOI 10	ECOLIN_RS06225	flagellar hook assembly protein FlgD	+1.7	Yes
MOI 10	ECOLIN_RS11090	flagellar basal body-associated protein FliL	variable
MOI 10	ECOLIN_RS16115	single-stranded-DNA-specific exonuclease RecJ	-1.1	Yes
MOI 10	ECOLIN_RS17845	DedA family general envelope maintenance protein YqjA	-1.7	Yes
MOI 10	ECOLIN_RS18370	lipid asymmetry maintenance protein MlaB	variable
MOI 10	ECOLIN_RS18375	phospholipid-binding protein MlaC	variable
MOI 10	ECOLIN_RS18380	outer membrane lipid asymmetry maintenance protein MlaD	variable
MOI 10	ECOLIN_RS18385	lipid asymmetry maintenance ABC transporter permease subunit MlaE	variable
MOI 10	ECOLIN_RS18390	phospholipid ABC transporter ATP-binding protein MlaF	variable	Yes
MOI 10	ECOLIN_RS19465	Tex family protein	variable
MOI 10	ECOLIN_RS19520	HTH-type transcriptional regulator MalT	variable	Yes
MOI 10	ECOLIN_RS20295	kdo(2)-lipid A phosphoethanolamine 7''-transferase	+1.9	Yes
MOI 10	ECOLIN_RS21885	DNA helicase II	-1.7
MOI 10	ECOLIN_RS22830	phosphoethanolamine transferase CptA	variable
MOI 10	ECOLIN_RS23305	maltoporin LamB	+1.4	Yes
MOI 10	ECOLIN_RS23805	two-component system response regulator BasR	+1.2
Phage	ECOLIN_RS02750	efflux RND transporter permease AcrB	variable	Yes
Phage	ECOLIN_RS04340	outer membrane protein OmpX	variable	Yes
Phage	ECOLIN_RS04670	VirK/YbjX family protein	variable	Yes
Phage	ECOLIN_RS04920	porin OmpF	variable	Yes
Phage	ECOLIN_RS08730	multiple antibiotic resistance transcriptional regulator MarR	variable
Phage	ECOLIN_RS12165	diguanylate cyclase	variable
Phage	ECOLIN_RS15370	DUF3561 family protein	variable	Yes
Phage	ECOLIN_RS15645	DUF423 domain-containing protein	variable	Yes
Phage	ECOLIN_RS16165	aminomethyl-transferring glycine dehydrogenase	variable
Phage	ECOLIN_RS16170	glycine cleavage system protein GcvH	variable
Phage	ECOLIN_RS16415	pyridoxal phosphate homeostasis protein	variable
Phage	ECOLIN_RS17745	transcriptional regulator EbgR	variable
Phage	ECOLIN_RS17845	DedA family general envelope maintenance protein YqjA	variable
Phage	ECOLIN_RS17850	EnvZ/OmpR regulon moderator MzrA	variable	Yes
Phage	ECOLIN_RS19450	two-component system sensor histidine kinase EnvZ	variable
Phage	ECOLIN_RS19455	two-component system response regulator OmpR	variable
Phage	ECOLIN_RS19520	HTH-type transcriptional regulator MalT	variable
Phage	ECOLIN_RS19850	phage sensitivity protein DcrB	variable	Yes
Phage	ECOLIN_RS20190	cellulose synthase complex outer membrane protein BcsC	variable
Phage	ECOLIN_RS20200	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	variable
Phage	ECOLIN_RS20205	UDP-forming cellulose synthase catalytic subunit	variable
Phage	ECOLIN_RS20210	cellulose biosynthesis protein BcsQ	variable
Phage	ECOLIN_RS20215	cellulose biosynthesis protein BcsR	variable
Phage	ECOLIN_RS20220	cellulose biosynthesis c-di-GMP-binding protein BcsE	variable
Phage	ECOLIN_RS20230	cellulose biosynthesis protein BcsG	variable
Phage	ECOLIN_RS21550	D-ribose pyranase	variable
Phage	ECOLIN_RS21885	DNA helicase II	variable
Phage	ECOLIN_RS21930	phospholipase A	variable
Phage	ECOLIN_RS22905	TonB-dependent vitamin B12 receptor BtuB	variable
Phage	ECOLIN_RS23285	maltose ABC transporter permease MalF	variable
Phage	ECOLIN_RS23305	maltoporin LamB	variable
Phage	ECOLIN_RS23310	maltose operon protein MalM	variable
Phage	ECOLIN_RS24030	protein-disulfide reductase DsbD	variable
Phage	ECOLIN_RS24510	autotransporter assembly complex protein TamA	variable
Phage	ECOLIN_RS24515	autotransporter assembly complex protein TamB	variable
Phage	ECOLIN_RS25205	energy-dependent translational throttle protein EttA	variable	Yes
Phage	ECOLIN_RS26330	hypothetical protein	variable
Phage	ECOLIN_RS26340	helix-turn-helix transcriptional regulator	variable