Specific Phenotypes for Pseudomonas fluorescens FW300-N1B4 in pH experiments

Condition Gene Description Fitness Cons.
Pf1N1B4_1114 ABC transporter, ATP-binding protein variable  
Pf1N1B4_1144 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) -1.4 Yes
Pf1N1B4_1183 Sodium-dependent transporter family protein variable  
Pf1N1B4_1306 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) +1.2  
Pf1N1B4_1337 Outer membrane receptor proteins, mostly Fe transport +1.9 Yes
Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) -2.4 Yes
Pf1N1B4_1586 Purine-cytosine permease variable  
Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) -2.1  
Pf1N1B4_1887 probable exported protein YPO0432 +1.4  
Pf1N1B4_2143 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -1.9  
Pf1N1B4_2331 Thiazole biosynthesis protein ThiG -2.4  
Pf1N1B4_2504 5-aminopentanamidase (EC 3.5.1.30) (from data) -1.0  
Pf1N1B4_2637 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) +1.9  
Pf1N1B4_2687 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) -1.2  
Pf1N1B4_2714 FOG: TPR repeat, SEL1 subfamily +1.4  
Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) variable Yes
Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) +1.4 Yes
Pf1N1B4_2947 Restriction endonuclease +1.8  
Pf1N1B4_2957 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) -1.3  
Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) variable  
Pf1N1B4_3431 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) +1.1  
Pf1N1B4_3432 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) +1.3  
Pf1N1B4_3433 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) +1.3  
Pf1N1B4_3437 Arginine pathway regulatory protein ArgR, repressor of arg regulon +1.6  
Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) (from data) +1.7  
Pf1N1B4_3482 outer membrane protein H1 +1.3  
Pf1N1B4_3496 Cytochrome c-type biogenesis protein ResA +1.3  
Pf1N1B4_366 FIG00954136: hypothetical protein variable  
Pf1N1B4_3696 FIG00955360: hypothetical protein -3.7  
Pf1N1B4_3996 Histone acetyltransferase HPA2 and related acetyltransferases variable  
Pf1N1B4_4858 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY +1.6  
Pf1N1B4_5045 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone +1.4  
Pf1N1B4_5636 Histidine kinase/response regulator hybrid protein +1.3  
Pf1N1B4_5822 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B variable Yes
Pf1N1B4_5824 Na(+) H(+) antiporter subunit D -3.4 Yes
Pf1N1B4_596 Glucose ABC transport system, periplasmic sugar-binding protein -4.0 Yes
Pf1N1B4_621 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) -2.5 Yes
Pf1N1B4_630 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain -4.5  
Pf1N1B4_654 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein variable