Specific Phenotypes for Rhodanobacter denitrificans MT42 in pH experiments

Condition Gene Description Fitness Cons.
LRK55_RS00400 RNA chaperone Hfq +1.6  
LRK55_RS00485 alkyl hydroperoxide reductase subunit F -1.2  
LRK55_RS01265 barstar family protein -2.0  
LRK55_RS01595 DUF2147 domain-containing protein -2.0 Yes
LRK55_RS01870 efflux RND transporter periplasmic adaptor subunit -1.1  
LRK55_RS01875 multidrug efflux RND transporter permease subunit -1.5 Yes
LRK55_RS02075 RcnB family protein +5.4 Yes
LRK55_RS02540 PqiC family protein -2.4 Yes
LRK55_RS02550 paraquat-inducible protein A -2.9 Yes
LRK55_RS03585 RNA polymerase sigma factor +2.3 Yes
LRK55_RS03860 response regulator transcription factor -1.5  
LRK55_RS04060 kinase -3.7  
LRK55_RS04395 CTP synthase +1.4  
LRK55_RS04590 VTT domain-containing protein +1.7 Yes
LRK55_RS04645 tol-pal system protein YbgF -1.3 Yes
LRK55_RS04780 beta-phosphoglucomutase -1.7  
LRK55_RS05295 amidase -2.0 Yes
LRK55_RS05535 S1/P1 nuclease -3.8  
LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -1.5  
LRK55_RS06445 polysaccharide deacetylase family protein +1.9  
LRK55_RS06450 glycosyltransferase family 4 protein +1.7  
LRK55_RS06485 malonic semialdehyde reductase -1.5  
LRK55_RS06875 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA +1.3  
LRK55_RS06980 transglycosylase SLT domain-containing protein -2.1  
LRK55_RS07715 decarboxylating 6-phosphogluconate dehydrogenase -1.8  
LRK55_RS07980 AI-2E family transporter -2.4  
LRK55_RS08070 Lrp/AsnC family transcriptional regulator +1.4  
LRK55_RS08295 glycosyltransferase family 9 protein +1.3  
LRK55_RS08390 exodeoxyribonuclease III -2.3  
LRK55_RS08505 Bax inhibitor-1/YccA family protein -1.6  
LRK55_RS08780 rhomboid family intramembrane serine protease -1.8  
LRK55_RS08805 helix-turn-helix transcriptional regulator -2.6  
LRK55_RS09470 DUF1453 domain-containing protein +1.5 Yes
LRK55_RS09555 TraB/GumN family protein +1.5  
LRK55_RS09730 glycosyltransferase family 2 protein -1.5 Yes
LRK55_RS09745 glycosyltransferase family 2 protein -2.5  
LRK55_RS09750 glycosyltransferase -1.8 Yes
LRK55_RS09755 O-antigen ligase family protein -1.8 Yes
LRK55_RS09855 sterol desaturase family protein -1.6  
LRK55_RS11525 RidA family protein +1.0  
LRK55_RS11715 FecR family protein +1.9 Yes
LRK55_RS11800 MurR/RpiR family transcriptional regulator -1.8  
LRK55_RS12680 hypothetical protein -1.4  
LRK55_RS14210 ABC transporter permease subunit +1.3 Yes
LRK55_RS14320 hypothetical protein -2.7 Yes
LRK55_RS14490 cold-shock protein -1.6  
LRK55_RS14780 aspartyl/asparaginyl beta-hydroxylase domain-containing protein +1.4  
LRK55_RS16485 transglycosylase SLT domain-containing protein +2.0  
LRK55_RS17020 cation transporter -1.1  
LRK55_RS17685 exodeoxyribonuclease I -1.1  
LRK55_RS18055 TetR/AcrR family transcriptional regulator +1.7  
LRK55_RS18360 hypothetical protein -2.2  
LRK55_RS18365 HAMP domain-containing sensor histidine kinase -1.4  
LRK55_RS19250 S26 family signal peptidase -1.5