| Condition | Gene | Description | Fitness | Cons. |
|---|
| Adenine hydrochloride hydrate | AO356_00545 | methionine synthase | -1.6 | |
| Adenine hydrochloride hydrate | AO356_07845 | MFS transporter | -1.5 | |
| Adenine hydrochloride hydrate | AO356_07850 | hypothetical protein | -1.3 | |
| Adenine hydrochloride hydrate | AO356_08025 | adenosine deaminase | -2.2 | Yes |
| Adenine hydrochloride hydrate | AO356_08365 | Urease maturation and nickel insertion protein UreD (from data) | -1.8 | Yes |
| Adenine hydrochloride hydrate | AO356_08390 | Urease (EC 3.5.1.5) (from data) | -1.8 | Yes |
| Adenine hydrochloride hydrate | AO356_08450 | urease accessory protein UreE | -1.4 | Yes |
| Adenine hydrochloride hydrate | AO356_08460 | urease accessory protein UreG | -1.2 | Yes |
| Adenine hydrochloride hydrate | AO356_16890 | hypothetical protein | +1.2 | |
| Adenine hydrochloride hydrate | AO356_19450 | allantoicase | -1.7 | |
| Adenine hydrochloride hydrate | AO356_19455 | OHCU decarboxylase | -2.3 | Yes |
| Adenine hydrochloride hydrate | AO356_19460 | allantoinase (EC 3.5.2.5) (from data) | -2.0 | Yes |
| Adenine hydrochloride hydrate | AO356_19465 | 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (from data) | -3.4 | Yes |
| Adenosine | AO356_00505 | cobalamin biosynthesis protein CobN | -3.3 | Yes |
| Adenosine | AO356_00545 | methionine synthase | -4.0 | |
| Adenosine | AO356_00940 | uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) | -1.4 | Yes |
| Adenosine | AO356_01400 | ion channel protein Tsx | +5.6 | Yes |
| Adenosine | AO356_03485 | N-ethylammeline chlorohydrolase | -3.3 | Yes |
| Adenosine | AO356_08265 | precorrin-3B C17-methyltransferase | -2.3 | Yes |
| Adenosine | AO356_08270 | precorrin-2 C20-methyltransferase | -2.6 | Yes |
| Adenosine | AO356_19140 | cobyrinic acid a,c-diamide synthase | -2.9 | Yes |
| Adenosine | AO356_19150 | cobalamin biosynthesis protein CobD | -2.9 | Yes |
| Adenosine | AO356_19155 | threonine-phosphate decarboxylase | -2.2 | Yes |
| Adenosine | AO356_19460 | allantoinase (EC 3.5.2.5) (from data) | -2.1 | Yes |
| Carnitine Hydrochloride | AO356_05920 | S-(hydroxymethyl)glutathione dehydrogenase | -1.5 | |
| Carnitine Hydrochloride | AO356_05925 | LysR family transcriptional regulator | -1.4 | |
| Carnitine Hydrochloride | AO356_08830 | multidrug DMT transporter | -2.8 | |
| Carnitine Hydrochloride | AO356_13805 | ABC transporter for Carnitine, ATPase component (from data) | -2.8 | Yes |
| Carnitine Hydrochloride | AO356_13810 | ABC transporter for Carnitine, permease component (from data) | -3.5 | Yes |
| Carnitine Hydrochloride | AO356_13815 | ABC transporter for Carnitine, periplasmic substrate-binding component 1 (from data) | -2.8 | Yes |
| Carnitine Hydrochloride | AO356_13820 | serine dehydratase | -1.2 | |
| Carnitine Hydrochloride | AO356_13825 | AraC family transcriptional regulator | -3.3 | Yes |
| Carnitine Hydrochloride | AO356_13840 | L-carnitine 3-dehydrogenase, thioesterase-like subunit CdhB (EC 1.1.1.108) (from data) | -4.7 | Yes |
| Carnitine Hydrochloride | AO356_13845 | Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) | -3.3 | Yes |
| Carnitine Hydrochloride | AO356_13850 | NADPH:quinone reductase | -4.1 | Yes |
| Carnitine Hydrochloride | AO356_13855 | glycine/betaine ABC transporter substrate-binding protein | -3.2 | Yes |
| Carnitine Hydrochloride | AO356_13860 | AraC family transcriptional regulator | -3.1 | Yes |
| Carnitine Hydrochloride | AO356_13895 | peptidase M19 | -4.3 | Yes |
| Carnitine Hydrochloride | AO356_13900 | hydrocarbon binding protein | -4.2 | Yes |
| Carnitine Hydrochloride | AO356_13905 | N-methylproline demethylase | -4.5 | Yes |
| Carnitine Hydrochloride | AO356_13910 | (Fe-S)-binding protein | -3.4 | Yes |
| Carnitine Hydrochloride | AO356_13915 | electron transfer flavoprotein subunit alpha | -4.3 | Yes |
| Carnitine Hydrochloride | AO356_13945 | Rieske (2Fe-2S) protein | -5.0 | Yes |
| Carnitine Hydrochloride | AO356_13950 | ferredoxin | -4.9 | Yes |
| Carnitine Hydrochloride | AO356_13970 | serine hydroxymethyltransferase | -4.4 | Yes |
| Carnitine Hydrochloride | AO356_13975 | sarcosine oxidase subunit beta | -3.8 | Yes |
| Carnitine Hydrochloride | AO356_13980 | sarcosine oxidase subunit delta | -3.1 | Yes |
| Carnitine Hydrochloride | AO356_13985 | sarcosine oxidase subunit alpha | -3.9 | Yes |
| Cytosine | AO356_07975 | ABC transporter | -1.1 | Yes |
| Cytosine | AO356_07980 | sugar ABC transporter permease | -1.5 | Yes |
| Cytosine | AO356_07985 | ABC transporter permease | -1.4 | Yes |
| Cytosine | AO356_08015 | ABC transporter substrate-binding protein | -1.4 | Yes |
| Cytosine | AO356_23085 | Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) | -1.4 | Yes |
| D-Glucosamine Hydrochloride | AO356_00450 | D-glucosaminate dehydratase (EC 4.3.1.9) (from data) | -4.5 | Yes |
| D-Glucosamine Hydrochloride | AO356_00470 | ABC transporter for D-Glucosamine, permease component 1 (from data) | -2.7 | Yes |
| D-Glucosamine Hydrochloride | AO356_00475 | ABC transporter for D-Glucosamine, permease component 2 (from data) | -5.0 | Yes |
| D-Glucosamine Hydrochloride | AO356_00480 | ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data) | -4.0 | Yes |
| D-Glucosamine Hydrochloride | AO356_17200 | histidine kinase | -1.8 | |
| D-Serine | AO356_02595 | D-alanyl-D-alanine carboxypeptidase | -3.2 | |
| D-Serine | AO356_03090 | aminotransferase | -5.3 | Yes |
| D-Serine | AO356_05320 | leucine ABC transporter substrate-binding protein | -1.3 | Yes |
| D-Serine | AO356_05325 | branched-chain amino acid transporter permease subunit LivH | -1.3 | Yes |
| D-Serine | AO356_05330 | leucine/isoleucine/valine transporter permease subunit | -1.3 | Yes |
| D-Serine | AO356_07360 | N-acetyl-anhydromuranmyl-L-alanine amidase | -2.4 | Yes |
| D-Serine | AO356_08340 | branched-chain amino acid ABC transporter substrate-binding protein | +1.2 | |
| D-Serine | AO356_08350 | urea ABC transporter permease subunit UrtC | +1.3 | |
| D-Serine | AO356_08355 | ABC transporter ATP-binding protein | +1.0 | |
| D-Serine | AO356_08480 | ABC transporter ATP-binding protein | +1.8 | |
| D-Serine | AO356_08485 | ABC transporter ATP-binding protein | +1.9 | |
| D-Serine | AO356_08490 | branched-chain amino acid ABC transporter permease | +1.9 | |
| D-Serine | AO356_08495 | branched-chain amino acid transporter permease subunit LivH | +1.9 | |
| D-Serine | AO356_08500 | amino acid ABC transporter substrate-binding protein | +1.9 | |
| D-Serine | AO356_08550 | transglutaminase | -2.0 | |
| D-Serine | AO356_08555 | molybdopterin oxidoreductase | -1.8 | |
| D-Serine | AO356_09295 | hypothetical protein | +1.1 | |
| D-Serine | AO356_09685 | maltodextrin phosphorylase | -1.1 | |
| D-Serine | AO356_10160 | ribosomal protein S6 modification protein | +1.6 | |
| D-Serine | AO356_11255 | hypothetical protein | -3.4 | |
| D-Serine | AO356_12705 | ammonia channel protein | -3.0 | |
| D-Serine | AO356_12995 | cell division protein ZapA | -4.0 | |
| D-Serine | AO356_13000 | hypothetical protein | -1.6 | |
| D-Serine | AO356_14110 | Putative D-serine transporter (from data) | -1.5 | Yes |
| D-Serine | AO356_14470 | short-chain dehydrogenase | -1.3 | |
| D-Serine | AO356_15235 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | -3.9 | Yes |
| D-Serine | AO356_15295 | nicotinate-nucleotide adenylyltransferase | +1.6 | |
| D-Serine | AO356_16150 | penicillin-binding protein 1B | -2.1 | |
| D-Serine | AO356_16855 | threonine synthase | -1.9 | |
| D-Serine | AO356_16860 | reactive intermediate/imine deaminase | -4.3 | |
| D-Serine | AO356_16865 | FAD-dependent oxidoreductase | -2.2 | |
| D-Serine | AO356_22860 | MFS transporter permease | +4.3 | |
| D-Serine | AO356_22865 | CdaR family transcriptional regulator | +4.4 | |
| D-Serine | AO356_30090 | XRE family transcriptional regulator | +2.5 | |
| Gly-Glu | AO356_00950 | Ribokinase (EC 2.7.1.15) (from data) | +2.1 | Yes |
| Gly-Glu | AO356_00955 | LacI family transcriptional regulator | +1.7 | Yes |
| Gly-Glu | AO356_00960 | ABC transporter permease | +1.7 | Yes |
| Gly-Glu | AO356_01565 | MerR family transcriptional regulator | +3.1 | |
| Gly-Glu | AO356_06230 | TetR family transcriptional regulator | +1.4 | Yes |
| Gly-Glu | AO356_07235 | peptide ABC transporter substrate-binding protein | +1.1 | Yes |
| Gly-Glu | AO356_07240 | peptide ABC transporter substrate-binding protein | -2.8 | Yes |
| Gly-Glu | AO356_07260 | peptide ABC transporter permease | -2.9 | Yes |
| Gly-Glu | AO356_07275 | peptide ABC transporter ATP-binding protein | -2.8 | Yes |
| Gly-Glu | AO356_08480 | ABC transporter ATP-binding protein | -1.6 | |
| Gly-Glu | AO356_08485 | ABC transporter ATP-binding protein | -1.7 | |
| Gly-Glu | AO356_08490 | branched-chain amino acid ABC transporter permease | -2.0 | |
| Gly-Glu | AO356_08495 | branched-chain amino acid transporter permease subunit LivH | -1.8 | Yes |
| Gly-Glu | AO356_16005 | methyltransferase | -2.6 | |
| Gly-Glu | AO356_18165 | serine dehydratase | -1.3 | |
| Gly-Glu | AO356_18170 | glycine dehydrogenase | -4.0 | Yes |
| Gly-Glu | AO356_18175 | glycine cleavage system protein H | -1.3 | |
| Gly-Glu | AO356_18180 | Fis family transcriptional regulator | -1.8 | Yes |
| Gly-Glu | AO356_18330 | hypothetical protein | +1.7 | |
| Gly-Glu | AO356_23240 | hypothetical protein | +1.5 | |
| Inosine | AO356_02215 | transcriptional regulator | +1.9 | |
| Inosine | AO356_02560 | Xanthine dehydrogenase (EC 1.17.1.4) (from data) | -1.6 | Yes |
| Inosine | AO356_02565 | Xanthine dehydrogenase (EC 1.17.1.4) (from data) | -1.5 | Yes |
| Inosine | AO356_02570 | molybdenum cofactor sulfurylase | -1.3 | |
| Inosine | AO356_02980 | molybdenum cofactor biosynthesis protein MoaA | -1.5 | |
| Inosine | AO356_03130 | hypothetical protein | -1.5 | |
| Inosine | AO356_03135 | LysR family transcriptional regulator | -1.3 | |
| Inosine | AO356_07845 | MFS transporter | -3.2 | |
| Inosine | AO356_07850 | hypothetical protein | -2.8 | |
| Inosine | AO356_08340 | branched-chain amino acid ABC transporter substrate-binding protein | +2.5 | |
| Inosine | AO356_08345 | urea ABC transporter permease | +2.0 | |
| Inosine | AO356_08350 | urea ABC transporter permease subunit UrtC | +1.7 | |
| Inosine | AO356_08370 | urease subunit gamma | -5.4 | |
| Inosine | AO356_08390 | Urease (EC 3.5.1.5) (from data) | -5.0 | Yes |
| Inosine | AO356_08450 | urease accessory protein UreE | -4.6 | Yes |
| Inosine | AO356_08460 | urease accessory protein UreG | -3.6 | Yes |
| Inosine | AO356_11145 | carbonate dehydratase | -1.1 | |
| Inosine | AO356_16690 | peptidylprolyl isomerase | -5.1 | Yes |
| Inosine | AO356_16890 | hypothetical protein | +3.0 | |
| Inosine | AO356_18125 | copper resistance protein CopD | +1.8 | |
| Inosine | AO356_18130 | copper resistance protein CopC | +2.2 | |
| Inosine | AO356_18135 | copper resistance protein CopB | +1.4 | |
| Inosine | AO356_18140 | copper oxidase | +1.9 | |
| Inosine | AO356_19440 | hypothetical protein | -1.1 | Yes |
| Inosine | AO356_19455 | OHCU decarboxylase | -2.8 | Yes |
| Inosine | AO356_19460 | allantoinase (EC 3.5.2.5) (from data) | -3.4 | Yes |
| L-Isoleucine | AO356_05340 | ABC transporter ATP-binding protein | +1.2 | Yes |
| L-Isoleucine | AO356_13595 | amino acid ABC transporter substrate-binding protein | -2.0 | |
| L-Isoleucine | AO356_15465 | AsnC family transcriptional regulator | -1.8 | Yes |
| L-Isoleucine | AO356_16750 | antibiotic biosynthesis monooxygenase | -3.4 | Yes |
| L-Isoleucine | AO356_20345 | GntR family transcriptional regulator | -1.7 | Yes |
| L-Isoleucine | AO356_22970 | Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) | -4.1 | Yes |
| L-Isoleucine | AO356_22975 | Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) | -1.2 | Yes |
| L-Isoleucine | AO356_22985 | branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) | -1.3 | Yes |
| L-Leucine | AO356_00455 | IclR family transcriptional regulator | -1.3 | |
| L-Leucine | AO356_08480 | ABC transporter ATP-binding protein | -1.5 | Yes |
| L-Leucine | AO356_08490 | branched-chain amino acid ABC transporter permease | -1.6 | Yes |
| L-Leucine | AO356_08495 | branched-chain amino acid transporter permease subunit LivH | -1.5 | Yes |
| L-Leucine | AO356_08525 | NAD synthetase | -1.5 | |
| L-Leucine | AO356_11820 | sugar ABC transporter ATP-binding protein | -1.5 | |
| L-Leucine | AO356_14910 | thioredoxin | +1.0 | |
| L-Leucine | AO356_16750 | antibiotic biosynthesis monooxygenase | -3.2 | |
| L-Leucine | AO356_16890 | hypothetical protein | +1.6 | |
| L-Leucine | AO356_19230 | TetR family transcriptional regulator | +3.0 | |
| L-Leucine | AO356_22970 | Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) | -4.2 | Yes |
| L-Leucine | AO356_22985 | branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) | -1.5 | Yes |
| L-Leucine | AO356_22990 | branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) | -1.4 | Yes |
| L-Leucine | AO356_23850 | histidine kinase | +1.3 | |
| L-Leucine | AO356_26135 | AraC family transcriptional regulator | +5.9 | Yes |
| L-Leucine | AO356_26140 | lysine transporter LysE | +5.8 | |
| L-Leucine | AO356_30005 | diguanylate cyclase | +1.1 | |
| L-Phenylalanine | AO356_03970 | AAA family ATPase | -2.5 | Yes |
| L-Phenylalanine | AO356_03975 | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | -2.5 | Yes |
| L-Phenylalanine | AO356_03985 | L-phenylalanine transaminase (EC 2.6.1.57) (from data) | -2.1 | Yes |
| L-Phenylalanine | AO356_05320 | leucine ABC transporter substrate-binding protein | -1.3 | Yes |
| L-Phenylalanine | AO356_05325 | branched-chain amino acid transporter permease subunit LivH | -1.5 | Yes |
| L-Phenylalanine | AO356_05330 | leucine/isoleucine/valine transporter permease subunit | -1.6 | Yes |
| L-Phenylalanine | AO356_05340 | ABC transporter ATP-binding protein | -1.6 | Yes |
| L-Phenylalanine | AO356_08525 | NAD synthetase | -2.3 | |
| L-Phenylalanine | AO356_16835 | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | -2.7 | Yes |
| L-Phenylalanine | AO356_19230 | TetR family transcriptional regulator | +5.0 | Yes |
| L-Phenylalanine | AO356_22845 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -2.4 | Yes |
| L-tyrosine disodium salt | AO356_03970 | AAA family ATPase | -3.1 | Yes |
| L-tyrosine disodium salt | AO356_03985 | L-phenylalanine transaminase (EC 2.6.1.57) (from data) | -2.8 | Yes |
| L-tyrosine disodium salt | AO356_05320 | leucine ABC transporter substrate-binding protein | -1.6 | |
| L-tyrosine disodium salt | AO356_05325 | branched-chain amino acid transporter permease subunit LivH | -2.1 | |
| L-tyrosine disodium salt | AO356_05330 | leucine/isoleucine/valine transporter permease subunit | -1.9 | |
| L-tyrosine disodium salt | AO356_05335 | ABC transporter ATP-binding protein | -1.6 | |
| L-tyrosine disodium salt | AO356_05340 | ABC transporter ATP-binding protein | -1.8 | |
| L-tyrosine disodium salt | AO356_18530 | L-tyrosine transporter (from data) | -3.5 | |
| L-tyrosine disodium salt | AO356_22845 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -4.4 | Yes |
| L-tyrosine disodium salt | AO356_24150 | hypothetical protein | +3.0 | |
| Putrescine Dihydrochloride | AO356_13135 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -5.5 | Yes |
| Putrescine Dihydrochloride | AO356_13150 | Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) | -3.2 | Yes |
| Sodium nitrite | AO356_02755 | histidine kinase | -2.1 | Yes |
| Sodium nitrite | AO356_16270 | carbonate dehydratase | -4.8 | |
| Sodium nitrite | AO356_16915 | AraC family transcriptional regulator | -1.2 | Yes |
| Sodium nitrite | AO356_16920 | hypothetical protein | -3.3 | Yes |
| Thymine | AO356_07955 | omega amino acid--pyruvate aminotransferase | -2.1 | Yes |
| Thymine | AO356_07960 | LysR family transcriptional regulator | -1.1 | Yes |
| Thymine | AO356_12705 | ammonia channel protein | -1.2 | |
| Thymine | AO356_23095 | Dihydropyrimidinase (EC 3.5.2.2) (from data) | -4.7 | Yes |
| Thymine | AO356_23100 | nitrate reductase | -2.1 | Yes |
| Thymine | AO356_23105 | Beta-ureidopropionase (EC 3.5.1.6) (from data) | -4.3 | Yes |
| Urea | AO356_02215 | transcriptional regulator | +1.8 | |
| Urea | AO356_07845 | MFS transporter | -2.1 | |
| Urea | AO356_07850 | hypothetical protein | -1.1 | |
| Urea | AO356_07855 | hypothetical protein | +1.1 | |
| Urea | AO356_08340 | branched-chain amino acid ABC transporter substrate-binding protein | +2.5 | |
| Urea | AO356_08345 | urea ABC transporter permease | +2.0 | |
| Urea | AO356_08350 | urea ABC transporter permease subunit UrtC | +1.5 | |
| Urea | AO356_08355 | ABC transporter ATP-binding protein | +1.6 | |
| Urea | AO356_08390 | Urease (EC 3.5.1.5) (from data) | -2.9 | Yes |
| Urea | AO356_08450 | urease accessory protein UreE | -2.1 | Yes |
| Urea | AO356_08460 | urease accessory protein UreG | -2.5 | Yes |
| Urea | AO356_11145 | carbonate dehydratase | -1.2 | Yes |
| Urea | AO356_16890 | hypothetical protein | +2.2 | |
| Urea | AO356_18125 | copper resistance protein CopD | +2.0 | |
| Urea | AO356_18130 | copper resistance protein CopC | +2.1 | |
| Urea | AO356_18135 | copper resistance protein CopB | +1.8 | |
| Urea | AO356_18140 | copper oxidase | +2.1 | |
| Urea | AO356_30090 | XRE family transcriptional regulator | +1.1 | |
| Uridine | AO356_03535 | BolA family transcriptional regulator | -1.6 | |
| Uridine | AO356_04535 | glycine cleavage system protein R | -1.3 | Yes |
| Uridine | AO356_07950 | methylmalonate-semialdehyde dehydrogenase | -1.0 | Yes |
| Uridine | AO356_07955 | omega amino acid--pyruvate aminotransferase | -3.8 | Yes |
| Uridine | AO356_07960 | LysR family transcriptional regulator | -2.6 | Yes |
| Uridine | AO356_12705 | ammonia channel protein | -1.3 | Yes |
| Uridine | AO356_23085 | Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) | -4.8 | Yes |
| Uridine | AO356_23095 | Dihydropyrimidinase (EC 3.5.2.2) (from data) | -4.6 | Yes |
| Uridine | AO356_23100 | nitrate reductase | -2.4 | Yes |
| Uridine | AO356_23105 | Beta-ureidopropionase (EC 3.5.1.6) (from data) | -4.8 | Yes |