| Condition | Gene | Description | Fitness | Cons. |
|---|
| Adenine hydrochloride hydrate | AO353_02315 | 5-hydroxyisourate hydrolase | -3.2 | Yes |
| Adenine hydrochloride hydrate | AO353_02325 | OHCU decarboxylase | -3.6 | Yes |
| Adenine hydrochloride hydrate | AO353_02335 | ureidoglycolate hydrolase | -2.1 | Yes |
| Adenine hydrochloride hydrate | AO353_02340 | hypothetical protein | -1.9 | Yes |
| Adenine hydrochloride hydrate | AO353_06115 | adenosine deaminase | -1.8 | Yes |
| Adenine hydrochloride hydrate | AO353_13400 | urease accessory protein UreG | -1.9 | Yes |
| Adenine hydrochloride hydrate | AO353_13410 | urease accessory protein UreE | -2.2 | Yes |
| Adenine hydrochloride hydrate | AO353_13495 | Urease (EC 3.5.1.5) (from data) | -1.9 | Yes |
| Adenine hydrochloride hydrate | AO353_13520 | urease accessory protein UreD | -1.8 | Yes |
| Adenosine | AO353_00055 | ion channel protein Tsx | +6.2 | Yes |
| Adenosine | AO353_00740 | molybdenum cofactor sulfurylase | -1.1 | |
| Adenosine | AO353_02090 | N-ethylammeline chlorohydrolase | -3.3 | Yes |
| Adenosine | AO353_02620 | threonine-phosphate decarboxylase | -1.7 | Yes |
| Adenosine | AO353_08075 | hemolysin III | -1.7 | |
| Adenosine | AO353_13595 | cobalt-precorrin-6A synthase | -1.5 | |
| Adenosine | AO353_20110 | MFS transporter | -1.3 | |
| Adenosine | AO353_20820 | sugar ABC transporter ATP-binding protein | +3.7 | |
| Carnitine Hydrochloride | AO353_02895 | MFS transporter | -1.0 | |
| Carnitine Hydrochloride | AO353_07650 | sarcosine oxidase subunit alpha | -3.1 | Yes |
| Carnitine Hydrochloride | AO353_07655 | sarcosine oxidase subunit delta | -2.8 | Yes |
| Carnitine Hydrochloride | AO353_07660 | sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data) | -3.1 | Yes |
| Carnitine Hydrochloride | AO353_07665 | Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) | -2.3 | Yes |
| Carnitine Hydrochloride | AO353_07675 | ferredoxin | -2.9 | Yes |
| Carnitine Hydrochloride | AO353_07680 | Rieske (2Fe-2S) protein | -3.5 | Yes |
| Carnitine Hydrochloride | AO353_07695 | electron transfer flavoprotein subunit beta | -3.0 | |
| Carnitine Hydrochloride | AO353_07705 | DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) (from data) | -3.1 | Yes |
| Carnitine Hydrochloride | AO353_07710 | DgcA Dimethylglycine demethylase subunit A (from data) | -2.9 | Yes |
| Carnitine Hydrochloride | AO353_07715 | hydrocarbon binding protein | -2.9 | Yes |
| Carnitine Hydrochloride | AO353_07720 | peptidase M19 | -2.4 | Yes |
| Carnitine Hydrochloride | AO353_07735 | AraC family transcriptional regulator | -1.8 | Yes |
| Carnitine Hydrochloride | AO353_07750 | carnitine 3-dehydrogenase [EC:1.1.1.108] (from data) | -3.1 | Yes |
| Carnitine Hydrochloride | AO353_07755 | betainyl-CoA thiolase (EC 3.1.2.-) (from data) | -2.7 | Yes |
| Carnitine Hydrochloride | AO353_07785 | ABC transporter for Carnitine, permease component (from data) | -1.5 | Yes |
| Carnitine Hydrochloride | AO353_07790 | ABC transporter for Carnitine, ATPase component (from data) | -2.1 | Yes |
| D-Alanine | AO353_04600 | glutamine ABC transporter ATP-binding protein | -1.3 | Yes |
| D-Alanine | AO353_04610 | amino acid ABC transporter permease | -1.0 | Yes |
| D-Alanine | AO353_09160 | AsnC family transcriptional regulator | -2.5 | Yes |
| D-Alanine | AO353_16120 | D-alanine and L-alanine transporter (from data) | -1.1 | Yes |
| D-Glucosamine Hydrochloride | AO353_04455 | Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) | -1.7 | Yes |
| D-Glucosamine Hydrochloride | AO353_21710 | ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data) | -3.9 | Yes |
| D-Glucosamine Hydrochloride | AO353_21715 | ABC transporter for D-glucosamine, permease component 1 (from data) | -3.8 | Yes |
| D-Glucosamine Hydrochloride | AO353_21720 | ABC transporter for D-glucosamine, permease component 2 (from data) | -4.1 | Yes |
| D-Glucosamine Hydrochloride | AO353_21740 | D-glucosaminate dehydratase (EC 4.3.1.9) (from data) | -4.7 | Yes |
| D-Serine | AO353_25210 | D-serine ammonia-lyase (EC 4.3.1.18) (from data) | -1.9 | Yes |
| D-Serine | AO353_25215 | transcriptional regulator | -1.2 | Yes |
| Gly-DL-Asp | AO353_03040 | ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) | +2.3 | |
| Gly-DL-Asp | AO353_03045 | ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) | +3.1 | |
| Gly-DL-Asp | AO353_04200 | TetR family transcriptional regulator | +2.5 | |
| Gly-DL-Asp | AO353_05375 | peptide ABC transporter substrate-binding protein | -2.8 | Yes |
| Gly-DL-Asp | AO353_05385 | porin | +5.0 | Yes |
| Gly-DL-Asp | AO353_05390 | peptide ABC transporter substrate-binding protein | +8.2 | Yes |
| Gly-DL-Asp | AO353_05395 | peptide ABC transporter permease | -1.8 | Yes |
| Gly-DL-Asp | AO353_05400 | peptide transporter | -2.8 | Yes |
| Gly-DL-Asp | AO353_05405 | peptide ABC transporter ATP-binding protein | -3.2 | Yes |
| Gly-DL-Asp | AO353_05410 | peptide ABC transporter ATP-binding protein | -2.5 | Yes |
| Gly-DL-Asp | AO353_07770 | AraC family transcriptional regulator | +1.2 | |
| Gly-DL-Asp | AO353_20825 | ABC transporter permease | +3.0 | |
| Gly-DL-Asp | AO353_20830 | LacI family transcriptional regulator | +5.0 | Yes |
| Gly-DL-Asp | AO353_20835 | Ribokinase (EC 2.7.1.15) (from data) | +5.6 | |
| Gly-DL-Asp | AO353_22935 | alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase | -2.1 | |
| Gly-Glu | AO353_03040 | ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) | +1.5 | |
| Gly-Glu | AO353_03045 | ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) | +2.1 | |
| Gly-Glu | AO353_03490 | Fis family transcriptional regulator | -1.0 | Yes |
| Gly-Glu | AO353_03500 | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | -2.4 | Yes |
| Gly-Glu | AO353_04200 | TetR family transcriptional regulator | +3.2 | Yes |
| Gly-Glu | AO353_05375 | peptide ABC transporter substrate-binding protein | -3.0 | Yes |
| Gly-Glu | AO353_05385 | porin | +3.2 | Yes |
| Gly-Glu | AO353_05390 | peptide ABC transporter substrate-binding protein | +6.0 | Yes |
| Gly-Glu | AO353_05395 | peptide ABC transporter permease | -2.6 | Yes |
| Gly-Glu | AO353_05400 | peptide transporter | -2.7 | Yes |
| Gly-Glu | AO353_05405 | peptide ABC transporter ATP-binding protein | -3.9 | Yes |
| Gly-Glu | AO353_05410 | peptide ABC transporter ATP-binding protein | -2.7 | Yes |
| Gly-Glu | AO353_08690 | acetylornithine deacetylase | +1.2 | Yes |
| Gly-Glu | AO353_11755 | ribosomal protein S6 modification protein | -1.0 | |
| Gly-Glu | AO353_12810 | L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) | +1.4 | |
| Gly-Glu | AO353_13285 | molybdopterin oxidoreductase | -1.1 | |
| Gly-Glu | AO353_13290 | transglutaminase | -1.5 | |
| Gly-Glu | AO353_13345 | branched-chain amino acid transporter permease subunit LivH | -1.1 | Yes |
| Gly-Glu | AO353_17350 | acyl-CoA dehydrogenase | +1.1 | |
| Gly-Glu | AO353_18010 | hypothetical protein | -1.6 | |
| Gly-Glu | AO353_18015 | AAA family ATPase | -1.6 | |
| Gly-Glu | AO353_20825 | ABC transporter permease | +2.3 | Yes |
| Gly-Glu | AO353_20830 | LacI family transcriptional regulator | +3.7 | Yes |
| Gly-Glu | AO353_20835 | Ribokinase (EC 2.7.1.15) (from data) | +4.0 | Yes |
| Gly-Glu | AO353_22935 | alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase | -1.5 | Yes |
| Gly-Glu | AO353_26885 | phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) | -1.5 | |
| Glycine | AO353_03490 | Fis family transcriptional regulator | -3.1 | Yes |
| Glycine | AO353_03495 | glycine cleavage system protein H | -2.5 | Yes |
| Glycine | AO353_03500 | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | -3.8 | Yes |
| Glycine | AO353_09140 | XRE family transcriptional regulator | -2.5 | |
| Glycine | AO353_13110 | putative transporter, required for glycine utilization (from data) | -4.4 | Yes |
| Glycine | AO353_17030 | serine hydrolase | -1.4 | Yes |
| Inosine | AO353_02315 | 5-hydroxyisourate hydrolase | -1.2 | Yes |
| Inosine | AO353_02325 | OHCU decarboxylase | -2.2 | Yes |
| Inosine | AO353_05055 | peptidylprolyl isomerase | -2.1 | Yes |
| Inosine | AO353_13400 | urease accessory protein UreG | -2.6 | Yes |
| Inosine | AO353_13410 | urease accessory protein UreE | -2.6 | Yes |
| Inosine | AO353_13495 | Urease (EC 3.5.1.5) (from data) | -2.7 | Yes |
| Inosine | AO353_13520 | urease accessory protein UreD | -3.1 | Yes |
| L-Arginine | AO353_03040 | ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) | -1.3 | Yes |
| L-Arginine | AO353_03045 | ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) | -1.5 | Yes |
| L-Arginine | AO353_10515 | 3-phosphoserine/phosphohydroxythreonine aminotransferase | -1.2 | |
| L-Citrulline | AO353_25630 | arginine N-succinyltransferase | -3.3 | |
| L-Citrulline | AO353_25635 | citrulline utilization hydrolase (from data) | -5.8 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | AO353_02620 | threonine-phosphate decarboxylase | -1.9 | |
| L-Glutamine | AO353_02620 | threonine-phosphate decarboxylase | -1.7 | |
| L-Glutamine | AO353_09955 | sodium:alanine symporter | -1.2 | |
| L-Glutamine | AO353_10515 | 3-phosphoserine/phosphohydroxythreonine aminotransferase | -1.3 | |
| L-Glutamine | AO353_10715 | LysR family transcriptional regulator | -1.2 | |
| L-Histidine | AO353_02620 | threonine-phosphate decarboxylase | -1.9 | |
| L-Histidine | AO353_12235 | Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) | -4.0 | Yes |
| L-Histidine | AO353_12250 | Urocanate hydratase (EC 4.2.1.49) (from data) | -2.7 | Yes |
| L-Histidine | AO353_12255 | sulfonate ABC transporter substrate-binding protein | -1.1 | Yes |
| L-Histidine | AO353_12275 | histidine permease (from data) | -1.0 | Yes |
| L-Histidine | AO353_12280 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -3.5 | Yes |
| L-Histidine | AO353_12285 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -3.9 | Yes |
| L-Lysine | AO353_07275 | histidine kinase | +1.4 | |
| L-Lysine | AO353_07415 | AsnC family transcriptional regulator | -3.2 | Yes |
| L-Lysine | AO353_07420 | Lysine 2-monooxygenase (EC 1.13.12.2) (from data) | -3.3 | Yes |
| L-Lysine | AO353_07425 | 5-aminopentanamidase (EC 3.5.1.30) (from data) | -2.0 | Yes |
| L-Lysine | AO353_08560 | spermidine/putrescine ABC transporter permease | -1.8 | |
| L-Lysine | AO353_08565 | spermidine/putrescine ABC transporter permease | -1.8 | Yes |
| L-Lysine | AO353_08570 | transporter | -1.6 | Yes |
| L-Lysine | AO353_08575 | ABC transporter substrate-binding protein | +1.4 | |
| L-Lysine | AO353_08580 | spermidine/putrescine ABC transporter substrate-binding protein | -2.0 | Yes |
| L-Lysine | AO353_11510 | 5-aminovalerate transaminase (EC 2.6.1.48) (from data) | -1.5 | Yes |
| L-Lysine | AO353_12250 | Urocanate hydratase (EC 4.2.1.49) (from data) | +1.6 | |
| L-Lysine | AO353_16960 | amino acid ABC transporter permease | -1.3 | Yes |
| L-Lysine | AO353_16965 | amino acid ABC transporter permease | -1.1 | Yes |
| L-Lysine | AO353_16970 | ABC transporter substrate-binding protein | -1.2 | Yes |
| L-Lysine | AO353_24805 | TetR family transcriptional regulator | +2.4 | Yes |
| L-Lysine | AO353_26885 | phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) | -1.4 | |
| L-Lysine | AO353_29285 | XRE family transcriptional regulator | +2.1 | |
| L-Phenylalanine | AO353_12810 | L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) | +2.0 | |
| L-Phenylalanine | AO353_15560 | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | -3.7 | Yes |
| L-Phenylalanine | AO353_17115 | leucine/isoleucine/valine transporter permease subunit | -1.3 | Yes |
| L-Phenylalanine | AO353_18585 | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | -2.3 | Yes |
| L-Phenylalanine | AO353_18590 | AAA family ATPase | -2.4 | Yes |
| L-Phenylalanine | AO353_26925 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -1.8 | Yes |
| L-Serine | AO353_15500 | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | -3.9 | Yes |
| L-Serine | AO353_15505 | LysR family transcriptional regulator | -3.7 | Yes |
| L-Threonine | AO353_03490 | Fis family transcriptional regulator | -2.1 | Yes |
| L-Threonine | AO353_03495 | glycine cleavage system protein H | -2.7 | Yes |
| L-Threonine | AO353_03500 | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | -2.8 | Yes |
| L-Threonine | AO353_07665 | Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) | +2.4 | |
| L-Threonine | AO353_07670 | L-threonine aldolase (EC 4.1.2.5) (from data) | -3.1 | Yes |
| L-Threonine | AO353_18985 | hypothetical protein | -3.3 | |
| L-Threonine | AO353_26885 | phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) | -1.6 | |
| L-Tryptophan | AO353_05930 | L-tryptophan transporter (from data) | -1.5 | |
| L-Tryptophan | AO353_05935 | Kynureninase (EC 3.7.1.3) (from data) | -3.2 | Yes |
| L-Tryptophan | AO353_05940 | AsnC family transcriptional regulator | -2.3 | Yes |
| L-Tryptophan | AO353_05945 | AraC family transcriptional regulator | -2.8 | |
| L-Tryptophan | AO353_05950 | Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) | -2.6 | |
| L-Tryptophan | AO353_05955 | Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) | -2.5 | |
| L-Tryptophan | AO353_05960 | anthranilate dioxygenase reductase | -2.2 | |
| L-Tryptophan | AO353_05965 | aromatic amino acid transporter | -1.3 | |
| L-Tryptophan | AO353_05970 | Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) | -3.3 | Yes |
| L-Tryptophan | AO353_05975 | Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) | -3.2 | |
| L-Tryptophan | AO353_09160 | AsnC family transcriptional regulator | -1.6 | |
| L-Tryptophan | AO353_17230 | Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (from data) | -1.0 | |
| L-tyrosine disodium salt | AO353_15550 | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | -2.1 | |
| L-tyrosine disodium salt | AO353_18575 | tyrosine aminotransferase (EC 2.6.1.57) (from data) | -2.6 | Yes |
| L-tyrosine disodium salt | AO353_18590 | AAA family ATPase | -2.3 | Yes |
| L-tyrosine disodium salt | AO353_26925 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -3.5 | Yes |
| N-Acetyl-D-Glucosamine | AO353_04450 | N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) | -3.3 | Yes |
| N-Acetyl-D-Glucosamine | AO353_04455 | Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) | -3.7 | Yes |
| N-Acetyl-D-Glucosamine | AO353_04460 | N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) | -3.1 | Yes |
| N-Acetyl-D-Glucosamine | AO353_04465 | N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) | -2.6 | Yes |
| N-Acetyl-D-Glucosamine | AO353_09920 | aldose epimerase | -1.1 | Yes |
| Parabanic Acid | AO353_13400 | urease accessory protein UreG | -2.2 | Yes |
| Parabanic Acid | AO353_13410 | urease accessory protein UreE | -3.3 | Yes |
| Parabanic Acid | AO353_13495 | Urease (EC 3.5.1.5) (from data) | -1.9 | Yes |
| Parabanic Acid | AO353_13520 | urease accessory protein UreD | -2.0 | Yes |
| Parabanic Acid | AO353_13525 | ABC transporter ATP-binding protein | -2.3 | Yes |
| Parabanic Acid | AO353_13540 | urea ABC transporter permease | -1.9 | Yes |
| Parabanic Acid | AO353_13545 | branched-chain amino acid ABC transporter substrate-binding protein | -1.7 | Yes |
| Putrescine Dihydrochloride | AO353_08580 | spermidine/putrescine ABC transporter substrate-binding protein | -1.2 | Yes |
| Putrescine Dihydrochloride | AO353_08595 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -1.9 | Yes |
| Putrescine Dihydrochloride | AO353_11505 | succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) | -3.1 | Yes |
| Putrescine Dihydrochloride | AO353_11510 | 5-aminovalerate transaminase (EC 2.6.1.48) (from data) | -1.2 | Yes |
| Putrescine Dihydrochloride | AO353_29315 | spermidine/putrescine ABC transporter permease | -1.4 | Yes |
| Sodium nitrate | AO353_00790 | histidine kinase | -2.8 | Yes |
| Sodium nitrate | AO353_00795 | MFS transporter | -1.7 | Yes |
| Sodium nitrate | AO353_00805 | Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) | -2.7 | Yes |
| Sodium nitrate | AO353_00815 | Nitrate reductase (EC 1.7.99.4) (from data) | -2.3 | Yes |
| Sodium nitrate | AO353_03395 | sugar ABC transporter substrate-binding protein | -1.3 | |
| Sodium nitrite | AO353_00790 | histidine kinase | -2.8 | Yes |
| Sodium nitrite | AO353_00805 | Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) | -3.2 | Yes |
| Sodium nitrite | AO353_00815 | Nitrate reductase (EC 1.7.99.4) (from data) | -2.5 | Yes |
| Sodium nitrite | AO353_03395 | sugar ABC transporter substrate-binding protein | -1.3 | |
| Sodium nitrite | AO353_22745 | LysR family transcriptional regulator | -1.2 | Yes |
| Thymine | AO353_06085 | omega amino acid--pyruvate aminotransferase | -2.7 | Yes |
| Thymine | AO353_06090 | LysR family transcriptional regulator | -2.3 | Yes |
| Thymine | AO353_26560 | Beta-ureidopropionase (EC 3.5.1.6) (from data) | -3.9 | Yes |
| Thymine | AO353_26565 | nitrate reductase | -3.1 | Yes |
| Thymine | AO353_26570 | Dihydropyrimidinase (EC 3.5.2.2) (from data) | -4.6 | Yes |
| Urea | AO353_05055 | peptidylprolyl isomerase | -2.3 | Yes |
| Urea | AO353_13400 | urease accessory protein UreG | -3.4 | Yes |
| Urea | AO353_13410 | urease accessory protein UreE | -4.0 | Yes |
| Urea | AO353_13495 | Urease (EC 3.5.1.5) (from data) | -3.3 | Yes |
| Urea | AO353_13515 | Urease (EC 3.5.1.5) (from data) | -4.3 | Yes |
| Urea | AO353_13520 | urease accessory protein UreD | -4.2 | Yes |
| Uridine | AO353_06085 | omega amino acid--pyruvate aminotransferase | -3.8 | Yes |
| Uridine | AO353_06090 | LysR family transcriptional regulator | -3.9 | Yes |
| Uridine | AO353_15390 | histidine kinase | -1.0 | Yes |
| Uridine | AO353_26560 | Beta-ureidopropionase (EC 3.5.1.6) (from data) | -4.0 | Yes |
| Uridine | AO353_26565 | nitrate reductase | -3.7 | Yes |
| Uridine | AO353_26570 | Dihydropyrimidinase (EC 3.5.2.2) (from data) | -3.7 | Yes |
| Uridine | AO353_26575 | dihydropyrimidine dehydrogenase | -3.5 | Yes |
| Uridine | AO353_26580 | Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) | -5.0 | Yes |