| Condition | Gene | Description | Fitness | Cons. |
|---|
| Adenine hydrochloride hydrate | Pf1N1B4_5381 | hypothetical protein | +1.6 | |
| Carnitine Hydrochloride | Pf1N1B4_2420 | L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) | -2.0 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2428 | FIG143042: Thioesterase-like protein | -3.4 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2429 | Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) | -2.1 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2438 | FIG00953113: hypothetical protein | -2.3 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2439 | DgcA Dimethylglycine demethylase subunit A | -2.4 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2440 | Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF | -2.8 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2448 | GbcB Glycine betaine demethylase subunit B | -1.9 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2454 | Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) | -2.2 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2455 | Sarcosine oxidase beta subunit (EC 1.5.3.1) | -2.8 | Yes |
| Carnitine Hydrochloride | Pf1N1B4_2457 | Sarcosine oxidase alpha subunit (EC 1.5.3.1) | -2.1 | Yes |
| Cytidine | Pf1N1B4_1241 | Transcriptional regulator RutR of pyrimidine catabolism (TetR family) | +1.3 | |
| Cytidine | Pf1N1B4_1431 | Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) | +1.2 | |
| Cytidine | Pf1N1B4_1693 | Cystine ABC transporter, periplasmic cystine-binding protein FliY | +1.2 | |
| Cytidine | Pf1N1B4_2262 | Lysine ABC transporter, permease component (from data) | -1.1 | |
| Cytidine | Pf1N1B4_3203 | Cysteine synthase (EC 2.5.1.47) | +1.1 | |
| Cytosine | Pf1N1B4_1239 | Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) | -1.3 | Yes |
| Cytosine | Pf1N1B4_1250 | Nucleoside ABC transporter, periplasmic nucleoside-binding protein | -1.1 | Yes |
| D-Alanine | Pf1N1B4_211 | Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase | +1.2 | |
| D-Alanine | Pf1N1B4_2143 | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | -3.8 | Yes |
| D-Alanine | Pf1N1B4_801 | D-serine/D-alanine/glycine transporter | -1.5 | Yes |
| D-Glucosamine Hydrochloride | Pf1N1B4_1313 | tRNA dihydrouridine synthase B (EC 1.-.-.-) | +1.3 | |
| D-Glucosamine Hydrochloride | Pf1N1B4_1555 | Polyhydroxyalkanoic acid synthase | +1.5 | |
| D-Glucosamine Hydrochloride | Pf1N1B4_2986 | sensor histidine kinase | +1.1 | |
| L-Arginine | Pf1N1B4_3440 | Succinylornithine transaminase (EC 2.6.1.81) (from data) | -3.3 | Yes |
| L-Citrulline | Pf1N1B4_3322 | L-aspartate oxidase (EC 1.4.3.16) | -2.4 | |
| L-Citrulline | Pf1N1B4_3432 | ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) | -1.3 | |
| L-Citrulline | Pf1N1B4_3433 | ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) | -1.2 | |
| L-Citrulline | Pf1N1B4_3437 | Arginine pathway regulatory protein ArgR, repressor of arg regulon | -2.4 | |
| L-Citrulline | Pf1N1B4_3440 | Succinylornithine transaminase (EC 2.6.1.81) (from data) | -3.0 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | Pf1N1B4_5658 | Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) | -1.6 | |
| L-Histidine | Pf1N1B4_1578 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -3.2 | Yes |
| L-Histidine | Pf1N1B4_1579 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -3.0 | Yes |
| L-Histidine | Pf1N1B4_1580 | Histidine transport protein (permease) | -1.1 | Yes |
| L-Histidine | Pf1N1B4_1587 | Urocanate hydratase (EC 4.2.1.49) (from data) | -1.8 | Yes |
| L-Histidine | Pf1N1B4_1588 | hypothetical protein | -1.4 | |
| L-Histidine | Pf1N1B4_1591 | Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) | -3.1 | Yes |
| L-Leucine | Pf1N1B4_1380 | Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) | -1.1 | Yes |
| L-Leucine | Pf1N1B4_1381 | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | -1.1 | Yes |
| L-Leucine | Pf1N1B4_1489 | Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | +1.8 | Yes |
| L-Leucine | Pf1N1B4_386 | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | +1.3 | |
| L-Lysine | Pf1N1B4_2259 | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | -1.5 | Yes |
| L-Lysine | Pf1N1B4_2261 | Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) | -1.6 | Yes |
| L-Lysine | Pf1N1B4_2262 | Lysine ABC transporter, permease component (from data) | -1.6 | Yes |
| L-Lysine | Pf1N1B4_2504 | 5-aminopentanamidase (EC 3.5.1.30) (from data) | -2.5 | Yes |
| L-Lysine | Pf1N1B4_2505 | Lysine 2-monooxygenase (EC 1.13.12.2) (from data) | -3.7 | Yes |
| L-Lysine | Pf1N1B4_2506 | Transcriptional regulator, AsnC family | -2.6 | Yes |
| L-Lysine | Pf1N1B4_3177 | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | -1.4 | Yes |
| L-Lysine | Pf1N1B4_3178 | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) | -1.8 | Yes |
| L-Lysine | Pf1N1B4_3431 | ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) | +1.6 | |
| L-Lysine | Pf1N1B4_924 | Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein | +1.2 | Yes |
| L-Methionine | Pf1N1B4_1431 | Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) | +1.4 | |
| L-Methionine | Pf1N1B4_1489 | Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | +2.1 | Yes |
| L-Methionine | Pf1N1B4_1693 | Cystine ABC transporter, periplasmic cystine-binding protein FliY | +1.4 | |
| L-Methionine | Pf1N1B4_1694 | Cystine ABC transporter, permease protein | +1.0 | |
| L-Methionine | Pf1N1B4_1974 | L-lysine permease | +3.7 | |
| L-Methionine | Pf1N1B4_2501 | Pyrroloquinoline-quinone synthase (EC 1.3.3.11) | -1.5 | |
| L-Methionine | Pf1N1B4_4483 | Transcriptional regulator, ArsR family | +1.4 | |
| L-Serine | Pf1N1B4_1012 | Glycine cleavage system transcriptional activator | -2.3 | Yes |
| L-Serine | Pf1N1B4_1013 | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | -3.1 | Yes |
| L-Serine | Pf1N1B4_1014 | Serine transporter | -2.5 | |
| L-Serine | Pf1N1B4_1733 | 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) | -2.8 | |
| L-Serine | Pf1N1B4_1734 | Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) | -2.2 | |
| L-Serine | Pf1N1B4_2439 | DgcA Dimethylglycine demethylase subunit A | +1.1 | Yes |
| L-Serine | Pf1N1B4_386 | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | -1.2 | Yes |
| L-Valine | Pf1N1B4_3686 | Branched-chain amino acid transport system carrier protein | +1.6 | Yes |
| Putrescine Dihydrochloride | Pf1N1B4_1733 | 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) | -1.3 | Yes |
| Putrescine Dihydrochloride | Pf1N1B4_2254 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -2.5 | Yes |
| Sodium nitrate | Pf1N1B4_2502 | Coenzyme PQQ synthesis protein B | variable | |
| Sodium nitrate | Pf1N1B4_3835 | Nitrate reductase (EC 1.7.99.4) (from data) | -2.9 | Yes |
| Sodium nitrate | Pf1N1B4_3837 | Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) | -2.2 | Yes |
| Sodium nitrate | Pf1N1B4_3839 | Nitrate/nitrite transporter | -1.4 | Yes |
| Sodium nitrate | Pf1N1B4_3840 | Response regulator NasT | -2.8 | Yes |
| Sodium nitrate | Pf1N1B4_5042 | Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) | -1.7 | Yes |
| Sodium nitrite | Pf1N1B4_1006 | Permease of the drug/metabolite transporter (DMT) superfamily | variable | Yes |
| Sodium nitrite | Pf1N1B4_2444 | Cholesterol oxidase (EC 1.1.3.6) | variable | |
| Sodium nitrite | Pf1N1B4_2445 | FIG00506946: hypothetical protein | variable | |
| Sodium nitrite | Pf1N1B4_2446 | miscellaneous; unknown | variable | |
| Sodium nitrite | Pf1N1B4_2499 | Coenzyme PQQ synthesis protein E | -1.5 | |
| Sodium nitrite | Pf1N1B4_2501 | Pyrroloquinoline-quinone synthase (EC 1.3.3.11) | -1.5 | |
| Sodium nitrite | Pf1N1B4_2721 | AMP nucleosidase (EC 3.2.2.4) | -1.7 | |
| Sodium nitrite | Pf1N1B4_527 | Cytosine/purine/uracil/thiamine/allantoin permease family protein | +1.6 | |
| Sodium nitrite | Pf1N1B4_696 | Acetolactate synthase, large subunit (EC 2.2.1.6) | +1.6 | |
| Sodium nitrite | Pf1N1B4_784 | Transcriptional activator MetR | -2.1 | Yes |
| Uridine | Pf1N1B4_1240 | LysR family transcriptional regulator PA0133 | -1.6 | Yes |
| Uridine | Pf1N1B4_5381 | hypothetical protein | +1.2 | |