Specific Phenotypes for Azospirillum brasilense Sp245 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Cytosine AZOBR_RS06955 sugar ABC transporter permease -2.3 Yes
Cytosine AZOBR_RS06960 ABC transporter permease -2.2 Yes
Cytosine AZOBR_RS06965 ABC transporter substrate-binding protein -2.5 Yes
Cytosine AZOBR_RS19335 asparagine synthase +1.0  
Cytosine AZOBR_RS29710 amidase +1.4  
Cytosine AZOBR_RS30860 sensor histidine kinase -1.6  
Cytosine AZOBR_RS31875 ABC transporter substrate-binding protein -3.9  
Cytosine AZOBR_RS31885 ABC transporter permease -2.5  
Cytosine AZOBR_RS31895 cytosine deaminase -6.1 Yes
D-Alanine AZOBR_RS02860 peptidylprolyl isomerase -1.5  
D-Alanine AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) -5.4 Yes
D-Alanine AZOBR_RS08405 aminodeoxychorismate lyase -3.4  
D-Alanine AZOBR_RS08655 amino acid ABC transporter substrate-binding protein -3.3 Yes
D-Alanine AZOBR_RS08665 amino acid ABC transporter permease -2.4 Yes
D-Alanine AZOBR_RS16170 peptidase S41 -2.5  
D-Alanine AZOBR_RS19395 glycosyl hydrolase -1.4  
D-Alanine AZOBR_RS21915 LysR family transcriptional regulator -3.0  
L-Asparagine AZOBR_RS00830 L-asparaginase -4.9  
L-Asparagine AZOBR_RS08655 amino acid ABC transporter substrate-binding protein -1.5  
L-Aspartic Acid AZOBR_RS08655 amino acid ABC transporter substrate-binding protein -4.4 Yes
L-Aspartic Acid AZOBR_RS08665 amino acid ABC transporter permease -2.5 Yes
L-Aspartic Acid AZOBR_RS29395 transcriptional regulator TrmB -4.2  
L-Citrulline AZOBR_RS08090 urease accessory protein UreG -1.8  
L-Citrulline AZOBR_RS19590 ornithine-oxoacid aminotransferase -2.0  
L-Citrulline AZOBR_RS23695 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) -1.4 Yes
L-Histidine AZOBR_RS28655 hypothetical protein +1.1  
L-Histidine AZOBR_RS28705 putative bacteriophage protein +1.1  
L-Histidine AZOBR_RS28775 putative bacteriophage protein +1.3  
L-Histidine AZOBR_RS28790 hypothetical protein +1.1  
L-Histidine AZOBR_RS28820 hypothetical protein +1.3  
L-Isoleucine AZOBR_RS02325 ABC transporter substrate-binding protein -1.3  
L-Isoleucine AZOBR_RS04255 hypothetical protein -1.5  
L-Isoleucine AZOBR_RS06470 hypothetical protein +1.6  
L-Isoleucine AZOBR_RS09890 hypothetical protein +2.0  
L-Isoleucine AZOBR_RS25755 histidine kinase +2.1  
L-Isoleucine AZOBR_RS25765 hypothetical protein +2.2  
L-Isoleucine AZOBR_RS26780 hypothetical protein +1.5  
L-Isoleucine AZOBR_RS32180 hypothetical protein -2.1  
L-Leucine AZOBR_RS06555 Branched-chain-amino-acid transaminase (EC 2.6.1.42) (from data) -2.3 Yes
L-Leucine AZOBR_RS22380 transcriptional regulator +1.3  
L-Leucine AZOBR_RS32180 hypothetical protein -2.5 Yes
L-Lysine AZOBR_RS04265 2-isopropylmalate synthase -1.8  
L-Lysine AZOBR_RS17360 electron transfer flavoprotein -1.6  
L-Lysine AZOBR_RS19635 succinate-semialdehyde dehydrogenase -1.9  
L-Lysine AZOBR_RS32620 aldehyde dehydrogenase -2.7 Yes
L-Lysine AZOBR_RS32630 LysR family transcriptional regulator -2.7 Yes
L-Serine AZOBR_RS08075 glutamate racemase -1.8  
L-Threonine AZOBR_RS06285 epoxyqueuosine reductase -1.2  
L-Threonine AZOBR_RS12680 MFS transporter -1.1  
L-Threonine AZOBR_RS14110 pyridoxamine kinase -3.0  
L-Threonine AZOBR_RS14605 ABC transporter substrate-binding protein -1.3  
L-Threonine AZOBR_RS20015 C4-dicarboxylate ABC transporter -1.1  
Parabanic Acid AZOBR_RS08070 urease subunit alpha -3.3 Yes
Parabanic Acid AZOBR_RS08090 urease accessory protein UreG -4.8 Yes
Parabanic Acid AZOBR_RS08905 RNA polymerase sigma 70 -1.5  
Parabanic Acid AZOBR_RS11705 urea ABC transporter ATP-binding protein -1.6 Yes
Parabanic Acid AZOBR_RS11710 urea ABC transporter ATP-binding protein -1.4 Yes
Parabanic Acid AZOBR_RS11715 amino acid ABC transporter permease -1.5  
Parabanic Acid AZOBR_RS11725 branched-chain amino acid ABC transporter substrate-binding protein -1.2  
Parabanic Acid AZOBR_RS21065 amidohydrolase +1.3  
Parabanic Acid AZOBR_RS30860 sensor histidine kinase -1.4  
Parabanic Acid AZOBR_RS30970 glycine oxidase -1.8  
Parabanic Acid AZOBR_RS33805 hypothetical protein -1.6  
Sodium nitrate AZOBR_RS18550 ABC transporter for nitrate, ATPase component (from data) -2.7 Yes
Sodium nitrate AZOBR_RS18555 ABC transporter for nitrate, permease component (from data) -3.4 Yes
Sodium nitrate AZOBR_RS18560 ABC transporter for nitrate, periplasmic substrate-binding component (from data) -3.1 Yes
Sodium nitrate AZOBR_RS18565 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) -4.4 Yes
Sodium nitrate AZOBR_RS18570 nitrite reductase -5.6  
Sodium nitrate AZOBR_RS30970 glycine oxidase -2.0  
Urea AZOBR_RS08090 urease accessory protein UreG -6.2 Yes