| Condition | Gene | Description | Fitness | Cons. |
|---|
| Ammonium chloride | Ac3H11_1358 | L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) (from data) | +1.4 | |
| Ammonium chloride | Ac3H11_1388 | Flagellar motor rotation protein MotB | +2.3 | |
| Ammonium chloride | Ac3H11_1389 | Flagellar motor rotation protein MotA | +1.2 | |
| Ammonium chloride | Ac3H11_1390 | Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) | -1.3 | |
| Ammonium chloride | Ac3H11_1393 | methyltransferase, putative | -1.2 | |
| Ammonium chloride | Ac3H11_1396 | Cephalosporin hydroxylase | -1.6 | |
| Ammonium chloride | Ac3H11_1417 | Regulatory protein, LuxR:Response regulator receiver | +1.4 | |
| Ammonium chloride | Ac3H11_167 | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | -1.1 | |
| Ammonium chloride | Ac3H11_1725 | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | -1.6 | |
| Ammonium chloride | Ac3H11_173 | Related to two-component system sensory/regulatory protein | +1.5 | |
| Ammonium chloride | Ac3H11_1833 | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | -2.4 | |
| Ammonium chloride | Ac3H11_1840 | Ribose operon repressor | -2.0 | |
| Ammonium chloride | Ac3H11_1914 | Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) | -1.9 | |
| Ammonium chloride | Ac3H11_2563 | Adenylate cyclase (EC 4.6.1.1) | -3.4 | |
| Ammonium chloride | Ac3H11_2564 | Response regulator receiver:Transcriptional regulatory protein, C terminal | -3.5 | |
| Ammonium chloride | Ac3H11_2630 | Alpha/beta hydrolase fold | -1.4 | |
| Ammonium chloride | Ac3H11_2831 | Isocitrate lyase (EC 4.1.3.1) (from data) | -1.4 | |
| Ammonium chloride | Ac3H11_3083 | Benzoyl-CoA oxygenase component A | -2.3 | |
| Ammonium chloride | Ac3H11_3559 | Flagellar transcriptional activator FlhC | +1.3 | |
| Ammonium chloride | Ac3H11_3634 | Signaling protein with a acyltransferase and GGDEF domains | +1.3 | |
| Ammonium chloride | Ac3H11_4027 | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | -1.5 | |
| Ammonium chloride | Ac3H11_493 | toluenesulfonate zinc-independent alcohol dehydrogenase | +2.9 | |
| Ammonium chloride | Ac3H11_495 | Aldehyde dehydrogenase (EC 1.2.1.3) | +3.2 | |
| Ammonium chloride | Ac3H11_506 | biphenyl-2,3-diol 1,2-dioxygenase III-related protein | +1.9 | |
| Ammonium chloride | Ac3H11_681 | Ribosome hibernation protein YhbH | -1.1 | |
| Ammonium chloride | Ac3H11_968 | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | +2.0 | |
| D-Alanine | Ac3H11_4846 | Transcriptional regulator | -2.7 | |
| D-Alanine | Ac3H11_4848 | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | -3.0 | Yes |
| D-Alanine | Ac3H11_506 | biphenyl-2,3-diol 1,2-dioxygenase III-related protein | +1.4 | |
| D-Alanine | Ac3H11_968 | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | +1.6 | |
| L-Alanine | Ac3H11_4846 | Transcriptional regulator | -3.0 | |
| L-Alanine | Ac3H11_4848 | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | -3.4 | |
| L-Arginine | Ac3H11_3401 | Ammonium transporter | -2.2 | |
| L-Arginine | Ac3H11_3403 | Probable signal peptide protein | -2.2 | |
| L-Arginine | Ac3H11_3685 | Urease accessory protein UreG | -2.0 | Yes |
| L-Arginine | Ac3H11_3689 | Urease alpha subunit (EC 3.5.1.5) | -1.9 | Yes |
| L-Arginine | Ac3H11_701 | Arginase (EC 3.5.3.1) (from data) | -3.4 | Yes |
| L-Glutamine | Ac3H11_153 | Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation) | -1.9 | |
| L-Glutamine | Ac3H11_530 | 2-isopropylmalate synthase (EC 2.3.3.13) | -1.2 | |
| L-Histidine | Ac3H11_1394 | Galactoside O-acetyltransferase (EC 2.3.1.18) | -1.1 | |
| L-Histidine | Ac3H11_2548 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -4.8 | Yes |
| L-Histidine | Ac3H11_2549 | Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) | -7.6 | Yes |
| L-Histidine | Ac3H11_2550 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -5.1 | Yes |
| L-Histidine | Ac3H11_2552 | Phytanoyl-CoA dioxygenase | -4.2 | |
| L-Histidine | Ac3H11_2554 | ABC transporter for L-Histidine, permease component 1 (from data) | -3.0 | |
| L-Histidine | Ac3H11_2555 | ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data) | -5.4 | |
| L-Histidine | Ac3H11_2556 | Transcriptional regulator, IclR family | -5.9 | |
| L-Histidine | Ac3H11_2557 | Urocanate hydratase (EC 4.2.1.49) (from data) | -5.5 | Yes |
| L-Histidine | Ac3H11_2558 | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | -5.9 | Yes |
| L-Histidine | Ac3H11_2560 | ABC transporter for L-Histidine, ATPase component (from data) | -6.1 | |
| L-Histidine | Ac3H11_2561 | ABC transporter for L-Histidine, permease component 2 (from data) | -4.7 | |
| L-Histidine | Ac3H11_2562 | ABC transporter for L-Histidine, periplasmic substrate-binding component 2 (from data) | -4.3 | |
| L-Histidine | Ac3H11_3274 | 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) | -1.8 | |
| L-Histidine | Ac3H11_3297 | 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) | -1.6 | |
| L-Histidine | Ac3H11_475 | Hydroxymethylpyrimidine ABC transporter, substrate-binding component | +1.3 | |
| L-Histidine | Ac3H11_985 | Outer membrane vitamin B12 receptor BtuB | -2.0 | |
| L-Isoleucine | Ac3H11_1358 | L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) (from data) | -2.9 | |
| L-Isoleucine | Ac3H11_1363 | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | -1.8 | |
| L-Isoleucine | Ac3H11_2606 | 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like | -5.2 | |
| L-Isoleucine | Ac3H11_2993 | Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) | -1.9 | |
| L-Isoleucine | Ac3H11_2994 | 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) | -3.0 | Yes |
| L-Isoleucine | Ac3H11_2996 | 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) (from data) | -1.7 | Yes |
| L-Isoleucine | Ac3H11_493 | toluenesulfonate zinc-independent alcohol dehydrogenase | +2.4 | |
| L-Isoleucine | Ac3H11_495 | Aldehyde dehydrogenase (EC 1.2.1.3) | +2.4 | |
| L-Isoleucine | Ac3H11_5000 | 2-isopropylmalate synthase (EC 2.3.3.13) | -1.3 | Yes |
| L-Isoleucine | Ac3H11_506 | biphenyl-2,3-diol 1,2-dioxygenase III-related protein | +1.6 | |
| L-Isoleucine | Ac3H11_530 | 2-isopropylmalate synthase (EC 2.3.3.13) | -1.8 | |
| L-Leucine | Ac3H11_133 | Transcriptional regulator, LuxR family | -1.9 | |
| L-Leucine | Ac3H11_1358 | L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) (from data) | -2.7 | Yes |
| L-Leucine | Ac3H11_2831 | Isocitrate lyase (EC 4.1.3.1) (from data) | -6.5 | |
| L-Leucine | Ac3H11_2991 | Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) | -6.2 | Yes |
| L-Leucine | Ac3H11_3009 | Acetoacetate--CoA ligase (EC 6.2.1.16) (from data) | -3.2 | |
| L-Leucine | Ac3H11_3011 | Dienelactone hydrolase and related enzymes | -4.9 | |
| L-Leucine | Ac3H11_503 | Outer membrane protein assembly factor YaeT precursor | -1.5 | |
| L-Leucine | Ac3H11_506 | biphenyl-2,3-diol 1,2-dioxygenase III-related protein | +1.3 | |
| L-Leucine | Ac3H11_715 | Transcriptional regulator, LysR family, in glycolate utilization operon | -1.2 | |
| L-Phenylalanine | Ac3H11_1015 | Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) | -3.4 | |
| L-Phenylalanine | Ac3H11_1847 | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | -4.6 | Yes |
| L-Phenylalanine | Ac3H11_1848 | Tricarboxylate transport protein TctC | -3.1 | |
| L-Phenylalanine | Ac3H11_1849 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -4.8 | Yes |
| L-Phenylalanine | Ac3H11_1852 | Transcriptional regulator, AsnC family | -5.0 | |
| L-Phenylalanine | Ac3H11_2306 | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | -4.2 | Yes |
| L-Phenylalanine | Ac3H11_3545 | Glyoxalase family protein | -5.3 | |
| L-Phenylalanine | Ac3H11_4961 | NADPH:quinone oxidoreductase | -3.4 | |
| L-Proline | Ac3H11_1079 | NADP-dependent malic enzyme (EC 1.1.1.40) | -1.5 | |
| L-Proline | Ac3H11_2849 | PutR, transcriptional activator of PutA and PutP | -4.5 | Yes |
| L-Proline | Ac3H11_2850 | L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) | -5.6 | Yes |
| L-Serine | Ac3H11_4236 | Homoserine dehydrogenase (EC 1.1.1.3) | -2.4 | |
| L-Serine | Ac3H11_4846 | Transcriptional regulator | -1.6 | |
| L-Serine | Ac3H11_929 | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | -3.7 | Yes |
| L-Threonine | Ac3H11_2063 | Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) | -2.0 | |
| L-Threonine | Ac3H11_2404 | Aspartate aminotransferase (EC 2.6.1.1) | -1.5 | |
| L-Threonine | Ac3H11_2563 | Adenylate cyclase (EC 4.6.1.1) | -1.9 | |
| L-Threonine | Ac3H11_2564 | Response regulator receiver:Transcriptional regulatory protein, C terminal | -2.5 | |
| L-Threonine | Ac3H11_2606 | 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like | -4.2 | |
| L-Threonine | Ac3H11_2994 | 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) | -1.9 | |
| L-Threonine | Ac3H11_2996 | 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) (from data) | -1.2 | |
| L-Threonine | Ac3H11_35 | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | -5.2 | |
| L-Threonine | Ac3H11_4236 | Homoserine dehydrogenase (EC 1.1.1.3) | -6.2 | |
| L-Threonine | Ac3H11_4237 | hypothetical protein | -5.1 | |
| L-Threonine | Ac3H11_501 | ABC-type multidrug transport system, permease component | -2.5 | |
| L-Threonine | Ac3H11_503 | Outer membrane protein assembly factor YaeT precursor | -1.3 | |
| L-tyrosine disodium salt | Ac3H11_1241 | Molybdenum cofactor biosynthesis protein MoaC | +1.5 | |
| L-tyrosine disodium salt | Ac3H11_1503 | Molybdopterin biosynthesis protein MoeA | +1.1 | |
| L-tyrosine disodium salt | Ac3H11_1574 | hypothetical protein | +1.9 | |
| L-tyrosine disodium salt | Ac3H11_165 | Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) | +1.9 | |
| L-tyrosine disodium salt | Ac3H11_166 | Glycine cleavage system H protein | +2.2 | |
| L-tyrosine disodium salt | Ac3H11_1849 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -1.1 | Yes |
| L-tyrosine disodium salt | Ac3H11_1852 | Transcriptional regulator, AsnC family | -1.7 | |
| L-tyrosine disodium salt | Ac3H11_1913 | FIG00581832: hypothetical protein | +1.1 | |
| L-tyrosine disodium salt | Ac3H11_1914 | Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) | +1.5 | |
| L-tyrosine disodium salt | Ac3H11_1916 | 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) | +1.3 | |
| L-tyrosine disodium salt | Ac3H11_2043 | OsmC/Ohr family protein | +1.5 | |
| L-tyrosine disodium salt | Ac3H11_2306 | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | -1.7 | |
| L-tyrosine disodium salt | Ac3H11_2379 | exported protein | +1.4 | |
| L-tyrosine disodium salt | Ac3H11_2582 | Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B | -1.4 | |
| L-tyrosine disodium salt | Ac3H11_283 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) | +1.6 | |
| L-tyrosine disodium salt | Ac3H11_2831 | Isocitrate lyase (EC 4.1.3.1) (from data) | -2.5 | |
| L-tyrosine disodium salt | Ac3H11_2908 | ABC transporter ATP-binding protein | +1.9 | |
| L-tyrosine disodium salt | Ac3H11_2909 | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | +2.1 | |
| L-tyrosine disodium salt | Ac3H11_2910 | Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | +2.1 | |
| L-tyrosine disodium salt | Ac3H11_2911 | ABC transporter, periplasmic substrate-binding protein | +2.1 | |
| L-tyrosine disodium salt | Ac3H11_3401 | Ammonium transporter | +1.2 | |
| L-tyrosine disodium salt | Ac3H11_3545 | Glyoxalase family protein | -1.3 | |
| L-tyrosine disodium salt | Ac3H11_3797 | Formate dehydrogenase chain D (EC 1.2.1.2) | +1.6 | |
| L-tyrosine disodium salt | Ac3H11_3802 | Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2) | +1.1 | |
| L-tyrosine disodium salt | Ac3H11_3803 | Formate dehydrogenase-O, major subunit (EC 1.2.1.2) | +1.2 | |
| L-tyrosine disodium salt | Ac3H11_3804 | Putative formate dehydrogenase-specific chaperone | +1.2 | |
| L-tyrosine disodium salt | Ac3H11_3805 | Iron-sulfur cluster-binding protein | +1.2 | |
| L-tyrosine disodium salt | Ac3H11_3806 | FIG00433900: hypothetical protein | +1.1 | |
| L-tyrosine disodium salt | Ac3H11_3875 | FIG015547: peptidase, M16 family | -2.8 | |
| L-tyrosine disodium salt | Ac3H11_4004 | Thiol:disulfide interchange protein DsbC | +2.1 | |
| L-tyrosine disodium salt | Ac3H11_4031 | Predicted nucleotidyltransferase | -1.6 | |
| L-tyrosine disodium salt | Ac3H11_4262 | Protein YidD | +1.9 | |
| L-tyrosine disodium salt | Ac3H11_4529 | Acyl-CoA-binding protein | +1.4 | |
| L-tyrosine disodium salt | Ac3H11_484 | Molybdopterin biosynthesis protein MoeA | +1.4 | |
| L-tyrosine disodium salt | Ac3H11_486 | Molybdopterin-guanine dinucleotide biosynthesis protein MobA | +1.7 | |
| L-tyrosine disodium salt | Ac3H11_487 | Molybdenum cofactor biosynthesis protein MoaA | +1.5 | |
| Uridine | Ac3H11_1383 | Flagellar biosynthesis protein FlhF | +1.5 | |
| Uridine | Ac3H11_1388 | Flagellar motor rotation protein MotB | +1.9 | |
| Uridine | Ac3H11_1417 | Regulatory protein, LuxR:Response regulator receiver | +1.5 | |
| Uridine | Ac3H11_1418 | Probable two-component sensor, near polyamine transporter | +1.4 | |
| Uridine | Ac3H11_173 | Related to two-component system sensory/regulatory protein | +1.5 | |
| Uridine | Ac3H11_2377 | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | -1.1 | |
| Uridine | Ac3H11_2594 | FIG01199081: hypothetical protein | -3.6 | |
| Uridine | Ac3H11_2953 | Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism | -5.6 | Yes |
| Uridine | Ac3H11_2954 | Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) | -4.7 | Yes |
| Uridine | Ac3H11_2955 | Cytosine/purine/uracil/thiamine/allantoin permease family protein | -3.4 | Yes |
| Uridine | Ac3H11_2956 | Dihydropyrimidinase (EC 3.5.2.2) (from data) | -5.5 | Yes |
| Uridine | Ac3H11_2957 | N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) | -3.7 | Yes |
| Uridine | Ac3H11_3068 | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | +1.5 | |
| Uridine | Ac3H11_3226 | gluconate TRAP transporter, periplasmic solute-binding component (from data) | -2.1 | |
| Uridine | Ac3H11_3227 | gluconate TRAP transporter, large permease component (from data) | -2.2 | |
| Uridine | Ac3H11_3228 | gluconate TRAP transporter, small permease component (from data) | -1.7 | |
| Uridine | Ac3H11_3403 | Probable signal peptide protein | -1.1 | |
| Uridine | Ac3H11_3559 | Flagellar transcriptional activator FlhC | +1.4 | |
| Uridine | Ac3H11_3634 | Signaling protein with a acyltransferase and GGDEF domains | +1.1 | |
| Uridine | Ac3H11_3712 | Transcriptional regulator, TetR family | +1.2 | |
| Uridine | Ac3H11_383 | FIG01198699: hypothetical protein | -2.9 | |
| Uridine | Ac3H11_4340 | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) | -2.7 | Yes |
| Uridine | Ac3H11_4342 | Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) | -3.2 | Yes |
| Uridine | Ac3H11_4344 | Regulatory protein, LysR:LysR, substrate-binding | -2.3 | Yes |
| Uridine | Ac3H11_4846 | Transcriptional regulator | -2.1 | |
| Uridine | Ac3H11_4848 | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | -2.3 | |