Specific Phenotypes for Methanococcus maripaludis S2 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Adenosine MMP_RS02225 carbohydrate kinase family protein +14.0  
Adenosine MMP_RS03610 NCS2 family permease +3.7  
Adenosine MMP_RS04425 APC family permease +1.6  
Adenosine MMP_RS08160 EamA family transporter +4.7 Yes
Cytidine MMP_RS06660 glycosyltransferase family 4 protein +1.2  
Cytosine MMP_RS06650 glycoside hydrolase family 57 protein +1.1  
Cytosine MMP_RS06660 glycosyltransferase family 4 protein +1.2  
D-Alanine MMP_RS00375 ammonium transporter -1.8  
D-Alanine MMP_RS01375 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -2.1  
D-Alanine MMP_RS07770 alanine racemase -3.4 Yes
D-Glucosamine Hydrochloride MMP_RS00375 ammonium transporter -2.7 Yes
Gly-DL-Asp MMP_RS00055 DUF2254 domain-containing protein +1.0  
Gly-DL-Asp MMP_RS00375 ammonium transporter +1.4  
Gly-DL-Asp MMP_RS01135 molybdate ABC transporter substrate-binding protein +2.0  
Gly-DL-Asp MMP_RS01145 ABC transporter ATP-binding protein +2.2  
Gly-Glu MMP_RS00375 ammonium transporter +2.1  
Glycine MMP_RS00375 ammonium transporter +2.3  
Glycine MMP_RS01135 molybdate ABC transporter substrate-binding protein +2.0  
Glycine MMP_RS01145 ABC transporter ATP-binding protein +2.0  
Glycine MMP_RS08665 hypothetical protein +1.4  
Inosine MMP_RS00375 ammonium transporter +5.2  
Inosine MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.5 Yes
Inosine MMP_RS01430 mechanosensitive ion channel family protein +1.7  
Inosine MMP_RS01435 DMT family transporter +2.0  
Inosine MMP_RS02225 carbohydrate kinase family protein +3.6  
Inosine MMP_RS08160 EamA family transporter +1.9  
L-Alanine MMP_RS00375 ammonium transporter -2.1  
L-Alanine MMP_RS01375 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -2.8  
L-Arginine MMP_RS00375 ammonium transporter +2.0  
L-Arginine MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.6  
L-Arginine MMP_RS01145 ABC transporter ATP-binding protein +1.7  
L-Aspartic Acid MMP_RS00375 ammonium transporter +1.7  
L-Carnitine hydrochloride MMP_RS01145 ABC transporter ATP-binding protein +1.6  
L-Glutamic acid monopotassium salt monohydrate MMP_RS00955 coenzyme gamma-F420-2:alpha-L-glutamate ligase -2.1  
L-Glutamic acid monopotassium salt monohydrate MMP_RS01135 molybdate ABC transporter substrate-binding protein +2.3  
L-Glutamic acid monopotassium salt monohydrate MMP_RS01145 ABC transporter ATP-binding protein +2.2  
L-Glutamic acid monopotassium salt monohydrate MMP_RS03495 Na/Pi cotransporter family protein -1.5  
L-Glutamic acid monopotassium salt monohydrate MMP_RS07180 DEAD/DEAH box helicase -1.6  
L-Glutamic acid monopotassium salt monohydrate MMP_RS07410 4-demethylwyosine synthase TYW1 -1.7  
L-Glutamic acid monopotassium salt monohydrate MMP_RS08085 hypothetical protein +1.2  
L-Glutamine MMP_RS00375 ammonium transporter -1.4  
L-Histidine MMP_RS01190 cadmium-translocating P-type ATPase -2.6  
L-Lysine MMP_RS03560 Na+/H+ antiporter NhaC family protein -1.6  
L-Methionine MMP_RS01375 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -2.0  
L-Ornithine MMP_RS03560 Na+/H+ antiporter NhaC family protein -1.7  
L-Proline MMP_RS01375 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -1.6  
L-Threonine MMP_RS01135 molybdate ABC transporter substrate-binding protein +3.3  
L-Threonine MMP_RS01145 ABC transporter ATP-binding protein +3.6  
L-Threonine MMP_RS04475 nitrogen fixation +3.0  
L-Threonine MMP_RS06970 ribosomal protein S18-alanine N-acetyltransferase -1.7  
L-Threonine MMP_RS08230 50S ribosomal protein L11 methyltransferase -1.6  
L-Tryptophan MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.5  
L-Tryptophan MMP_RS01375 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -1.4  
L-Valine MMP_RS01375 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -1.5  
L-Valine MMP_RS04475 nitrogen fixation -1.4  
L-tyrosine disodium salt MMP_RS02940 TatD family hydrolase +1.9  
L-tyrosine disodium salt MMP_RS03210 tRNA guanosine(15) transglycosylase TgtA +2.3  
L-tyrosine disodium salt MMP_RS04475 nitrogen fixation +1.7  
N-Acetyl-D-Glucosamine MMP_RS00375 ammonium transporter +2.9  
N-Acetyl-D-Glucosamine MMP_RS00660 alkaline phosphatase family protein +2.0  
N-Acetyl-D-Glucosamine MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.4  
N-Acetyl-D-Glucosamine MMP_RS03115 hypothetical protein +1.4  
N-Acetyl-D-Glucosamine MMP_RS03150 phosphoglycerate mutase +2.1  
N-Acetyl-D-Glucosamine MMP_RS07800 ATP-binding cassette domain-containing protein +1.2  
Parabanic Acid MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.7  
Parabanic Acid MMP_RS01145 ABC transporter ATP-binding protein +2.0  
Thymidine MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.6  
Thymidine MMP_RS01145 ABC transporter ATP-binding protein +1.9  
Thymidine MMP_RS02225 carbohydrate kinase family protein -2.0  
Thymidine MMP_RS05435 5'/3'-nucleotidase SurE +1.4  
Thymidine MMP_RS06500 ATP-binding protein -1.7  
Thymidine MMP_RS06915 metallophosphoesterase -4.1  
Thymidine MMP_RS06920 AAA family ATPase -3.7  
Thymidine MMP_RS06970 ribosomal protein S18-alanine N-acetyltransferase -1.7  
Thymidine MMP_RS06990 CatB-related O-acetyltransferase -1.5  
Thymidine MMP_RS07180 DEAD/DEAH box helicase -1.6  
Thymine MMP_RS05435 5'/3'-nucleotidase SurE -1.6  
Uridine MMP_RS00975 HD domain-containing protein +4.1  
Uridine MMP_RS01135 molybdate ABC transporter substrate-binding protein +1.5  
Uridine MMP_RS01145 ABC transporter ATP-binding protein +1.7  
Uridine MMP_RS01430 mechanosensitive ion channel family protein +2.7  
Uridine MMP_RS01435 DMT family transporter +3.8  
Uridine MMP_RS02225 carbohydrate kinase family protein +10.3  
Uridine MMP_RS03755 MarR family transcriptional regulator -1.9  
Uridine MMP_RS05435 5'/3'-nucleotidase SurE -2.1  
Uridine MMP_RS06650 glycoside hydrolase family 57 protein +3.2  
Uridine MMP_RS06660 glycosyltransferase family 4 protein +3.2  
casamino acids MMP_RS00980 hypothetical protein +1.3  
casamino acids MMP_RS04945 hypothetical protein +2.2  
casamino acids MMP_RS06300 ABC transporter substrate-binding protein +2.1  
casamino acids MMP_RS08850 hypothetical protein +1.6