Specific Phenotypes for Pantoea sp. MT58 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Ammonium chloride IAI47_01100 malate dehydrogenase (quinone) variable  
Ammonium chloride IAI47_03845 serine protease variable  
Ammonium chloride IAI47_07575 HTH-type transcriptional regulator Cbl variable Yes
Ammonium chloride IAI47_12615 methylglyoxal synthase -1.2  
Ammonium chloride IAI47_12730 FMNH2-dependent alkanesulfonate monooxygenase variable Yes
Ammonium chloride IAI47_13530 biotin synthase BioB variable  
Ammonium chloride IAI47_13535 adenosylmethionine--8-amino-7-oxononanoate transaminase variable Yes
Ammonium chloride IAI47_15340 hydroxyacylglutathione hydrolase -2.0  
Ammonium chloride IAI47_15655 3-methyl-2-oxobutanoate hydroxymethyltransferase variable Yes
Ammonium chloride IAI47_15660 pantoate--beta-alanine ligase -2.8 Yes
Ammonium chloride IAI47_17870 conjugal transfer protein TraF +1.8  
Ammonium chloride IAI47_18085 phosphomethylpyrimidine synthase ThiC variable  
Ammonium chloride IAI47_18090 thiamine phosphate synthase variable  
Ammonium chloride IAI47_20695 HesA/MoeB/ThiF family protein variable  
Sodium nitrate IAI47_05315 response regulator -1.6  
Sodium nitrate IAI47_05320 nitrate/nitrite two-component system sensor histidine kinase NarQ -1.2  
Sodium nitrate IAI47_06750 outer membrane permeability protein SanA +1.4  
Sodium nitrate IAI47_09805 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG -3.7  
Sodium nitrate IAI47_11160 uroporphyrinogen-III C-methyltransferase -3.1  
Sodium nitrate IAI47_11165 nitrate reductase -1.9 Yes
Sodium nitrate IAI47_11170 nitrite reductase small subunit NirD -3.7 Yes
Sodium nitrate IAI47_11175 ABC transporter ATP-binding protein -2.2 Yes
Sodium nitrate IAI47_11180 nitrate ABC transporter permease -3.2  
Sodium nitrate IAI47_11185 ABC transporter substrate-binding protein -3.2 Yes
Sodium nitrate IAI47_11190 nitrate- and nitrite sensing domain-containing protein -3.9 Yes
Sodium nitrate IAI47_13290 DNA-binding protein YbiB -1.4 Yes
Sodium nitrate IAI47_14580 ammonium transporter AmtB -1.0 Yes
Sodium nitrate IAI47_15340 hydroxyacylglutathione hydrolase -1.1  
Sodium nitrite IAI47_05315 response regulator -1.4  
Sodium nitrite IAI47_05865 hypothetical protein +1.8  
Sodium nitrite IAI47_08225 phosphate starvation-inducible protein PhoH -1.1  
Sodium nitrite IAI47_09805 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG -3.0  
Sodium nitrite IAI47_10480 HPP family protein -1.5  
Sodium nitrite IAI47_10740 hypothetical protein +1.2  
Sodium nitrite IAI47_11160 uroporphyrinogen-III C-methyltransferase -3.2  
Sodium nitrite IAI47_11165 nitrate reductase -1.3 Yes
Sodium nitrite IAI47_11170 nitrite reductase small subunit NirD -3.2  
Sodium nitrite IAI47_11175 ABC transporter ATP-binding protein -2.9  
Sodium nitrite IAI47_11180 nitrate ABC transporter permease -2.8  
Sodium nitrite IAI47_11185 ABC transporter substrate-binding protein -2.7  
Sodium nitrite IAI47_11190 nitrate- and nitrite sensing domain-containing protein -4.5  
Sodium nitrite IAI47_11205 type VI secretion system membrane subunit TssM -1.5  
Sodium nitrite IAI47_11680 type VI secretion system membrane subunit TssM +1.4  
Sodium nitrite IAI47_11690 type VI secretion system baseplate subunit TssK +1.5  
Sodium nitrite IAI47_13290 DNA-binding protein YbiB -1.5 Yes
Sodium nitrite IAI47_15340 hydroxyacylglutathione hydrolase -1.3  
TNT IAI47_01325 glutathione-disulfide reductase -1.5  
TNT IAI47_02465 metalloprotease TldD -1.9  
TNT IAI47_02765 metalloprotease PmbA -2.1  
TNT IAI47_03845 serine protease +2.5  
TNT IAI47_06330 DUF412 domain-containing protein -1.2  
TNT IAI47_06630 phosphatase PAP2 family protein -1.4  
TNT IAI47_06925 undecaprenyl-phosphate galactose phosphotransferase WbaP -1.7  
TNT IAI47_07570 nitrogen assimilation transcriptional regulator NAC -1.0  
TNT IAI47_11205 type VI secretion system membrane subunit TssM -1.5  
TNT IAI47_11575 protein kinase -1.3  
TNT IAI47_11700 SH3 domain-containing protein -1.3  
TNT IAI47_12935 leucyl/phenylalanyl-tRNA--protein transferase -1.9  
TNT IAI47_12950 ATP-dependent Clp protease adapter ClpS -1.3  
TNT IAI47_14510 efflux RND transporter periplasmic adaptor subunit -1.7  
TNT IAI47_14515 multidrug efflux RND transporter permease subunit -1.7  
TNT IAI47_17870 conjugal transfer protein TraF +2.0  
TNT IAI47_17970 hypothetical protein -3.0  
TNT IAI47_17975 YjbF family lipoprotein -1.8  
TNT IAI47_17980 capsule biosynthesis GfcC family protein -1.3  
TNT IAI47_17985 YjbH domain-containing protein -1.5  
TNT IAI47_18250 transcription/translation regulatory transformer protein RfaH -2.2  
TNT IAI47_18505 UDP-N-acetyl-D-mannosamine dehydrogenase -1.7  
TNT IAI47_18510 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -1.5  
TNT IAI47_19585 EAL domain-containing protein +1.2