| Condition | Gene | Description | Fitness | Cons. |
|---|
| L-Alanine | Ga0059261_1348 | Predicted membrane protein | +2.5 | |
| L-Alanine | Ga0059261_1887 | cation diffusion facilitator family transporter | -1.6 | |
| L-Alanine | Ga0059261_3327 | hypothetical protein | -1.6 | |
| L-Alanine | Ga0059261_3899 | Alanine dehydrogenase (EC 1.4.1.1) (from data) | -2.9 | Yes |
| L-Alanine | Ga0059261_3900 | Transcriptional regulators | -3.0 | |
| L-Alanine | Ga0059261_3969 | Serine hydrolase | -2.8 | |
| L-Glutamic acid monopotassium salt monohydrate | Ga0059261_2234 | Glycerol-3-phosphate dehydrogenase | -1.8 | |
| L-Glutamine | Ga0059261_0053 | Protein of unknown function (DUF4230) | -1.6 | |
| L-Glutamine | Ga0059261_0065 | ABC-type dipeptide transport system, periplasmic component | +2.7 | |
| L-Glutamine | Ga0059261_0079 | Protein of unknown function (DUF3089) | -2.1 | |
| L-Glutamine | Ga0059261_0095 | Ribosomal protein L7/L12 C-terminal domain | -1.7 | |
| L-Glutamine | Ga0059261_0152 | Protein of unknown function (DUF2794) | -1.1 | |
| L-Glutamine | Ga0059261_0220 | L-serine dehydratase, iron-sulfur-dependent, single chain form | +2.5 | |
| L-Glutamine | Ga0059261_0243 | Major Facilitator Superfamily | +1.0 | |
| L-Glutamine | Ga0059261_0265 | 3-oxoacid CoA-transferase, A subunit | -1.2 | |
| L-Glutamine | Ga0059261_0282 | ribosomal protein S12 methylthiotransferase RimO | +1.2 | |
| L-Glutamine | Ga0059261_0332 | Esterase/lipase | +2.6 | |
| L-Glutamine | Ga0059261_0632 | hypothetical protein | -1.0 | |
| L-Glutamine | Ga0059261_0743 | Kef-type K+ transport systems, membrane components | +2.5 | Yes |
| L-Glutamine | Ga0059261_0832 | Predicted permease | -1.1 | |
| L-Glutamine | Ga0059261_0883 | hypothetical protein | -1.2 | |
| L-Glutamine | Ga0059261_0917 | Predicted P-loop-containing kinase | variable | |
| L-Glutamine | Ga0059261_0960 | transcription-repair coupling factor (mfd) | +1.2 | |
| L-Glutamine | Ga0059261_1014 | cation diffusion facilitator family transporter | -1.8 | |
| L-Glutamine | Ga0059261_1015 | Predicted phosphatases | -2.2 | |
| L-Glutamine | Ga0059261_1066 | hypothetical protein | -2.9 | |
| L-Glutamine | Ga0059261_1306 | methionine-S-sulfoxide reductase | -1.8 | |
| L-Glutamine | Ga0059261_1385 | Glycosyltransferase | variable | |
| L-Glutamine | Ga0059261_1414 | Uncharacterized proteins, homologs of microcin C7 resistance protein MccF | variable | |
| L-Glutamine | Ga0059261_1420 | Protein of unknown function (DUF2490) | +2.1 | |
| L-Glutamine | Ga0059261_1443 | Hemolysins and related proteins containing CBS domains | +1.7 | |
| L-Glutamine | Ga0059261_1464 | Aspartyl/Asparaginyl beta-hydroxylase | +1.3 | |
| L-Glutamine | Ga0059261_1465 | Predicted Zn-dependent peptidases | -2.4 | |
| L-Glutamine | Ga0059261_1467 | Long-chain acyl-CoA synthetases (AMP-forming) | -1.9 | |
| L-Glutamine | Ga0059261_1487 | GMP synthase - Glutamine amidotransferase domain | +3.8 | |
| L-Glutamine | Ga0059261_1490 | Glycosyltransferase | -1.9 | |
| L-Glutamine | Ga0059261_1492 | Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) | +1.0 | |
| L-Glutamine | Ga0059261_1504 | Uncharacterized protein conserved in bacteria | +1.9 | |
| L-Glutamine | Ga0059261_1535 | Predicted transcriptional regulators | -2.3 | |
| L-Glutamine | Ga0059261_1541 | Predicted esterase of the alpha/beta hydrolase fold | +1.4 | |
| L-Glutamine | Ga0059261_1571 | SapC | +1.2 | |
| L-Glutamine | Ga0059261_1574 | Superfamily II DNA and RNA helicases | +2.1 | |
| L-Glutamine | Ga0059261_1577 | L-glutamine and L-histidine transporter (from data) | -2.2 | |
| L-Glutamine | Ga0059261_1775 | Transcriptional regulator/sugar kinase | -1.0 | |
| L-Glutamine | Ga0059261_1805 | penicillin-binding protein, 1A family | -1.9 | |
| L-Glutamine | Ga0059261_1815 | hypothetical protein | +1.2 | |
| L-Glutamine | Ga0059261_1842 | Protease II | -1.5 | |
| L-Glutamine | Ga0059261_1855 | Outer membrane cobalamin receptor protein | +3.2 | |
| L-Glutamine | Ga0059261_1887 | cation diffusion facilitator family transporter | -2.4 | |
| L-Glutamine | Ga0059261_1915 | transcriptional regulator, MucR family | -2.4 | |
| L-Glutamine | Ga0059261_1970 | Bacterial aa3 type cytochrome c oxidase subunit IV | +1.2 | |
| L-Glutamine | Ga0059261_1998 | Predicted SAM-dependent methyltransferases | -1.0 | |
| L-Glutamine | Ga0059261_2024 | aminopeptidase N, Escherichia coli type | -1.6 | |
| L-Glutamine | Ga0059261_2180 | methionine-R-sulfoxide reductase | -1.6 | |
| L-Glutamine | Ga0059261_2185 | FOG: Ankyrin repeat | -3.0 | |
| L-Glutamine | Ga0059261_2234 | Glycerol-3-phosphate dehydrogenase | -1.3 | |
| L-Glutamine | Ga0059261_2315 | Protein-disulfide isomerase | -1.6 | |
| L-Glutamine | Ga0059261_2421 | Sterol desaturase | -1.2 | |
| L-Glutamine | Ga0059261_2460 | Uncharacterized protein conserved in bacteria | -1.7 | |
| L-Glutamine | Ga0059261_2512 | Uncharacterized protein conserved in bacteria | +1.4 | |
| L-Glutamine | Ga0059261_2536 | Glutamine cyclotransferase | -2.5 | |
| L-Glutamine | Ga0059261_2695 | Methyltransferase domain | +1.7 | |
| L-Glutamine | Ga0059261_2771 | 3-hydroxybutyrate dehydrogenase | -1.1 | |
| L-Glutamine | Ga0059261_3266 | ribonuclease R | +2.4 | |
| L-Glutamine | Ga0059261_3523 | Acetyltransferases, including N-acetylases of ribosomal proteins | -1.3 | |
| L-Glutamine | Ga0059261_3612 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | -1.3 | |
| L-Glutamine | Ga0059261_3770 | Beta-lactamase class A | -3.2 | |
| L-Glutamine | Ga0059261_3842 | PAS domain S-box | +1.4 | |
| L-Glutamine | Ga0059261_3937 | Imidazolonepropionase and related amidohydrolases | +1.6 | |
| L-Glutamine | Ga0059261_4066 | FAD/FMN-containing dehydrogenases | -2.2 | |
| L-Glutamine | Ga0059261_4172 | hypothetical protein | +1.1 | |
| L-Glutamine | Ga0059261_4202 | Putative bacterial sensory transduction regulator | +1.7 | |
| L-Histidine | Ga0059261_0056 | Predicted transcriptional regulator | -1.2 | |
| L-Histidine | Ga0059261_0332 | Esterase/lipase | +1.1 | |
| L-Histidine | Ga0059261_0653 | Response regulator receiver domain | -1.2 | |
| L-Histidine | Ga0059261_0654 | Chemotaxis signal transduction protein | -1.4 | |
| L-Histidine | Ga0059261_0655 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain/CheW-like domain/Signal transducing histidine kinase, homodimeric domain | -1.4 | |
| L-Histidine | Ga0059261_1015 | Predicted phosphatases | -1.4 | |
| L-Histidine | Ga0059261_1304 | membrane protein, MarC family | +1.1 | Yes |
| L-Histidine | Ga0059261_1306 | methionine-S-sulfoxide reductase | -1.1 | |
| L-Histidine | Ga0059261_1487 | GMP synthase - Glutamine amidotransferase domain | +1.6 | |
| L-Histidine | Ga0059261_1521 | diguanylate cyclase (GGDEF) domain | -1.4 | |
| L-Histidine | Ga0059261_1535 | Predicted transcriptional regulators | -1.2 | |
| L-Histidine | Ga0059261_1577 | L-glutamine and L-histidine transporter (from data) | -1.5 | Yes |
| L-Histidine | Ga0059261_1855 | Outer membrane cobalamin receptor protein | +1.1 | |
| L-Histidine | Ga0059261_1953 | Na+/H+-dicarboxylate symporters | -1.2 | |
| L-Histidine | Ga0059261_2180 | methionine-R-sulfoxide reductase | -1.5 | |
| L-Histidine | Ga0059261_2234 | Glycerol-3-phosphate dehydrogenase | -1.5 | |
| L-Histidine | Ga0059261_2607 | transcriptional regulator, XRE family with cupin sensor | +1.8 | |
| L-Histidine | Ga0059261_3309 | formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-) | +1.6 | |
| L-Histidine | Ga0059261_3881 | Osmosensitive K+ channel histidine kinase | +1.3 | |
| L-Histidine | Ga0059261_3961 | Urocanate hydratase (EC 4.2.1.49) (from data) | -3.4 | Yes |
| L-Histidine | Ga0059261_3962 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -3.0 | Yes |
| L-Histidine | Ga0059261_3963 | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | -3.3 | Yes |
| L-Histidine | Ga0059261_3964 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -3.6 | Yes |
| L-Proline | Ga0059261_0065 | ABC-type dipeptide transport system, periplasmic component | +1.3 | |
| L-Proline | Ga0059261_0095 | Ribosomal protein L7/L12 C-terminal domain | -2.0 | |
| L-Proline | Ga0059261_0120 | lytic murein transglycosylase | +1.3 | |
| L-Proline | Ga0059261_0220 | L-serine dehydratase, iron-sulfur-dependent, single chain form | +1.4 | |
| L-Proline | Ga0059261_0303 | Predicted membrane protein | +1.3 | |
| L-Proline | Ga0059261_0332 | Esterase/lipase | +1.4 | |
| L-Proline | Ga0059261_0743 | Kef-type K+ transport systems, membrane components | +2.8 | |
| L-Proline | Ga0059261_0817 | GTP-binding protein TypA/BipA | +2.6 | |
| L-Proline | Ga0059261_0883 | hypothetical protein | -1.0 | |
| L-Proline | Ga0059261_0917 | Predicted P-loop-containing kinase | +3.1 | |
| L-Proline | Ga0059261_1043 | Uncharacterized protein conserved in bacteria | +2.3 | |
| L-Proline | Ga0059261_1313 | acetyl-coenzyme A synthetase (EC 6.2.1.1) | -1.1 | |
| L-Proline | Ga0059261_1420 | Protein of unknown function (DUF2490) | +1.8 | |
| L-Proline | Ga0059261_1464 | Aspartyl/Asparaginyl beta-hydroxylase | +1.5 | |
| L-Proline | Ga0059261_1465 | Predicted Zn-dependent peptidases | -1.9 | |
| L-Proline | Ga0059261_1487 | GMP synthase - Glutamine amidotransferase domain | +3.7 | |
| L-Proline | Ga0059261_1490 | Glycosyltransferase | -2.2 | |
| L-Proline | Ga0059261_1541 | Predicted esterase of the alpha/beta hydrolase fold | +1.5 | |
| L-Proline | Ga0059261_1577 | L-glutamine and L-histidine transporter (from data) | +2.2 | |
| L-Proline | Ga0059261_1855 | Outer membrane cobalamin receptor protein | +3.2 | |
| L-Proline | Ga0059261_2185 | FOG: Ankyrin repeat | -2.4 | |
| L-Proline | Ga0059261_2234 | Glycerol-3-phosphate dehydrogenase | -2.3 | |
| L-Proline | Ga0059261_2276 | Fatty acid hydroxylase superfamily | -1.4 | |
| L-Proline | Ga0059261_2460 | Uncharacterized protein conserved in bacteria | -1.1 | |
| L-Proline | Ga0059261_2512 | Uncharacterized protein conserved in bacteria | +1.3 | |
| L-Proline | Ga0059261_2536 | Glutamine cyclotransferase | -1.7 | |
| L-Proline | Ga0059261_2739 | heat-inducible transcription repressor HrcA | +1.4 | |
| L-Proline | Ga0059261_3266 | ribonuclease R | +1.3 | |
| L-Proline | Ga0059261_3602 | Glutaredoxin, GrxC family | +1.4 | |
| L-Proline | Ga0059261_3770 | Beta-lactamase class A | -1.9 | |
| L-Proline | Ga0059261_3881 | Osmosensitive K+ channel histidine kinase | +1.3 | |
| L-Proline | Ga0059261_3926 | L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | +1.9 | Yes |
| L-Proline | Ga0059261_4066 | FAD/FMN-containing dehydrogenases | -1.3 | |
| L-Proline | Ga0059261_4202 | Putative bacterial sensory transduction regulator | +1.4 | |