Specific Phenotypes for Dyella japonica UNC79MFTsu3.2 in nitrogen source experiments

Condition	Gene	Description	Fitness	Cons.
D-Glucosamine Hydrochloride	ABZR86_RS00615	catalase/peroxidase HPI	-4.3
D-Glucosamine Hydrochloride	ABZR86_RS03500	TonB-dependent siderophore receptor	-1.5
D-Glucosamine Hydrochloride	ABZR86_RS06685	acireductone dioxygenase	-1.9
Glucuronamide	ABZR86_RS00615	catalase/peroxidase HPI	-1.4
Glucuronamide	ABZR86_RS03500	TonB-dependent siderophore receptor	-1.7
L-Arginine	ABZR86_RS18410	Arginase (EC 3.5.3.1) (from data)	-2.5	Yes
L-Asparagine	ABZR86_RS03500	TonB-dependent siderophore receptor	-2.1
L-Asparagine	ABZR86_RS18985	protein-glutamate O-methyltransferase CheR	+1.7
L-Isoleucine	ABZR86_RS11580	Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data)	-1.5	Yes
L-Leucine	ABZR86_RS09280	amino acid permease	-1.0
L-Leucine	ABZR86_RS11580	Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data)	-1.1	Yes
L-Lysine	ABZR86_RS06670	amino acid permease	+1.0
L-Proline	ABZR86_RS01665	gluconate 2-dehydrogenase subunit 3 family protein	+2.5
L-Proline	ABZR86_RS01670	GMC family oxidoreductase	+2.3
L-Proline	ABZR86_RS01675	sugar phosphate isomerase/epimerase	+1.8
L-Proline	ABZR86_RS01680	nucleoside permease	+2.2
N-Acetyl-D-Glucosamine	ABZR86_RS00080	helix-turn-helix domain-containing protein	+1.4
N-Acetyl-D-Glucosamine	ABZR86_RS01820	YoaK family protein	+1.5
N-Acetyl-D-Glucosamine	ABZR86_RS06685	acireductone dioxygenase	-1.7
N-Acetyl-D-Glucosamine	ABZR86_RS16845	ATP-dependent DNA helicase DinG	-1.5
Sodium nitrate	ABZR86_RS03540	bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB	-2.6	Yes
Sodium nitrate	ABZR86_RS03545	gephyrin-like molybdotransferase Glp	-1.7	Yes
Sodium nitrate	ABZR86_RS03555	molybdenum cofactor biosynthesis protein MoaE	-2.2
Sodium nitrate	ABZR86_RS03560	molybdenum cofactor guanylyltransferase	-2.3
Sodium nitrate	ABZR86_RS03570	extracellular solute-binding protein	-1.2
Sodium nitrate	ABZR86_RS03575	ABC transporter permease subunit	-1.3
Sodium nitrate	ABZR86_RS03850	MFS transporter	-2.0	Yes
Sodium nitrate	ABZR86_RS03855	Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data)	-2.4	Yes
Sodium nitrate	ABZR86_RS03860	Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data)	-2.2	Yes
Sodium nitrate	ABZR86_RS03865	Nitrate reductase (EC 1.7.99.4) (from data)	-1.5	Yes
Sodium nitrate	ABZR86_RS03875	uroporphyrinogen-III synthase	-2.1
Sodium nitrate	ABZR86_RS09490	P-II family nitrogen regulator	+1.7
casamino acids	ABZR86_RS18985	protein-glutamate O-methyltransferase CheR	-1.1