Specific Phenotypes for Cupriavidus basilensis FW507-4G11 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Glucuronamide RR42_RS01750 hypothetical protein -1.5 Yes
Glucuronamide RR42_RS01760 ammonia channel protein -2.2 Yes
Glycine RR42_RS07595 hypothetical protein -2.5 Yes
Glycine RR42_RS14065 serine peptidase -2.8 Yes
Glycine RR42_RS18000 cell division protein ZapD -1.7  
Glycine RR42_RS20305 metal ABC transporter ATPase -2.0  
Glycine RR42_RS25930 glycine dehydrogenase (deaminating) (EC 1.4.1.10) (from data) -3.2 Yes
Glycine RR42_RS33205 UDP-glucose 6-dehydrogenase -2.7  
L-Citrulline RR42_RS03955 amidinotransferase -4.8  
L-Citrulline RR42_RS03960 ornithine cyclodeaminase -3.1  
L-Citrulline RR42_RS04375 magnesium transporter -1.7  
L-Citrulline RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) -1.9 Yes
L-Glutamine RR42_RS03985 histidine kinase +1.7  
L-Glutamine RR42_RS03990 aspartate:proton symporter Glt (from data) +1.5  
L-Isoleucine RR42_RS10345 amino acid dehydrogenase -2.8  
L-Isoleucine RR42_RS10350 indolepyruvate ferredoxin oxidoreductase -1.2  
L-Isoleucine RR42_RS10355 AsnC family transcriptional regulator -2.3  
L-Isoleucine RR42_RS25890 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -1.3 Yes
L-Leucine RR42_RS34245 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (from data) -3.7  
L-Leucine RR42_RS34250 LysR family transcriptional regulator -4.2  
L-Lysine RR42_RS00620 XRE family transcriptional regulator -1.8  
L-Lysine RR42_RS02375 membrane protein -2.8  
L-Lysine RR42_RS17690 3-dehydroquinate dehydratase -2.2  
L-Lysine RR42_RS18505 saccharopine dehydrogenase -3.6 Yes
L-Lysine RR42_RS18510 AsnC family transcriptional regulator -4.6 Yes
L-Lysine RR42_RS27395 GntR family transcriptional regulator -2.7  
L-Phenylalanine RR42_RS20365 phenylalanine-4-hydroxylase -4.7 Yes
L-Phenylalanine RR42_RS31275 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) -1.9  
L-Phenylalanine RR42_RS33490 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) -3.2 Yes
L-Serine RR42_RS00540 hypothetical protein -1.4  
L-Serine RR42_RS01760 ammonia channel protein -1.3 Yes
L-Serine RR42_RS20070 glycine dehydrogenase -1.6  
L-Serine RR42_RS20080 L-serine ammonia-lyase (EC 4.3.1.17) (from data) -3.6 Yes
L-Threonine RR42_RS25930 glycine dehydrogenase (deaminating) (EC 1.4.1.10) (from data) -4.0  
L-Threonine RR42_RS28295 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) -1.7  
L-Threonine RR42_RS28300 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) -1.8  
L-Tryptophan RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase -1.4  
L-Tryptophan RR42_RS13535 2-aminobenzoate-CoA ligase (EC 6.2.1.32) (from data) -1.2  
L-Tryptophan RR42_RS13550 3-hydroxyacyl-CoA dehydrogenase -2.2 Yes
L-Tryptophan RR42_RS13555 anthraniloyl-CoA monooxygenase (EC 1.14.13.40) (from data) -2.1  
L-Tryptophan RR42_RS15375 AsnC family transcriptional regulator -5.0 Yes
L-Tryptophan RR42_RS15385 Kynureninase (EC 3.7.1.3) (from data) -4.9 Yes
L-Tryptophan RR42_RS15390 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) -3.5 Yes
L-Valine RR42_RS05465 2-isopropylmalate synthase -3.7  
L-Valine RR42_RS05695 pyridoxal-5'-phosphate-dependent protein subunit beta -1.4  
L-Valine RR42_RS19540 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (EC 1.2.7.7) (from data) -1.1 Yes
L-Valine RR42_RS28545 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) -2.0 Yes
L-Valine RR42_RS30630 AsnC family transcriptional regulator -1.7  
Sodium nitrate RR42_RS01960 transcriptional regulator -3.2 Yes
Sodium nitrate RR42_RS03140 molybdenum cofactor biosynthesis protein MoaC -3.2 Yes
Sodium nitrate RR42_RS12530 molybdenum cofactor biosynthesis protein MoaA -3.6 Yes
Sodium nitrate RR42_RS14170 molybdopterin-guanine dinucleotide biosynthesis protein A -3.9 Yes
Sodium nitrate RR42_RS14175 molybdenum cofactor biosynthesis protein MoaA -3.1 Yes
Sodium nitrate RR42_RS16945 NAD-dependent dehydratase -1.8  
Sodium nitrate RR42_RS17690 3-dehydroquinate dehydratase -1.9  
Sodium nitrate RR42_RS31780 MFS transporter -2.7 Yes
Sodium nitrate RR42_RS31785 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) -3.5 Yes
Sodium nitrate RR42_RS31800 Nitrate reductase (EC 1.7.99.4) (from data) -3.4 Yes
Sodium nitrite RR42_RS01750 hypothetical protein +2.1  
Sodium nitrite RR42_RS01760 ammonia channel protein +1.8  
Sodium nitrite RR42_RS01940 glycosyl transferase -1.7 Yes
Sodium nitrite RR42_RS01960 transcriptional regulator -4.4 Yes
Sodium nitrite RR42_RS02535 metal ABC transporter permease -1.2  
Sodium nitrite RR42_RS02595 glutamine amidotransferase -1.9  
Sodium nitrite RR42_RS05465 2-isopropylmalate synthase -1.5  
Sodium nitrite RR42_RS07655 cystathionine beta-lyase -1.1  
Sodium nitrite RR42_RS16945 NAD-dependent dehydratase -2.9  
Sodium nitrite RR42_RS17290 LysR family transcriptional regulator -1.3  
Sodium nitrite RR42_RS17300 D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) -1.6  
Sodium nitrite RR42_RS17305 ion transporter -1.4  
Sodium nitrite RR42_RS26235 GntR family transcriptional regulator -1.8  
Sodium nitrite RR42_RS31780 MFS transporter -3.6  
Sodium nitrite RR42_RS31785 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) -3.4 Yes