Specific Phenotypes for Phocaeicola vulgatus CL09T03C04 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Ammonium chloride HMPREF1058_RS04660 response regulator -1.4  
Ammonium chloride HMPREF1058_RS05410 RNA polymerase sigma factor +1.6  
Ammonium chloride HMPREF1058_RS06355 threonine ammonia-lyase +1.7  
Ammonium chloride HMPREF1058_RS07620 long-chain fatty acid--CoA ligase variable  
Ammonium chloride HMPREF1058_RS09490 adenosine kinase +1.9  
Ammonium chloride HMPREF1058_RS09995 S-ribosylhomocysteine lyase -1.7  
Ammonium chloride HMPREF1058_RS13720 AI-2E family transporter -1.3  
Ammonium chloride HMPREF1058_RS13940 hypothetical protein +1.3  
Ammonium chloride HMPREF1058_RS14025 RsmD family RNA methyltransferase -1.6  
Ammonium chloride HMPREF1058_RS16045 hypothetical protein variable  
Ammonium chloride HMPREF1058_RS17225 phosphopyruvate hydratase -4.2  
Ammonium chloride HMPREF1058_RS17710 HAMP domain-containing histidine kinase variable  
Ammonium chloride HMPREF1058_RS20600 hypothetical protein variable  
L-Asparagine HMPREF1058_RS01230 redoxin domain-containing protein +1.6  
L-Asparagine HMPREF1058_RS03795 MATE family efflux transporter variable  
L-Asparagine HMPREF1058_RS04690 cation:proton antiporter -1.8  
L-Asparagine HMPREF1058_RS06405 Na+/H+ antiporter NhaA -1.1  
L-Asparagine HMPREF1058_RS14900 alanine:cation symporter family protein +4.8 Yes
L-Asparagine HMPREF1058_RS18070 ABC transporter permease variable  
L-Asparagine HMPREF1058_RS20480 site-specific integrase variable  
L-Glutamic acid HMPREF1058_RS06890 glutamine synthetase III -3.9 Yes
L-Glutamic acid HMPREF1058_RS06905 hypothetical protein -3.9  
L-Glutamic acid HMPREF1058_RS06920 glutamate synthase large subunit -3.1 Yes
L-Glutamic acid HMPREF1058_RS16635 sodium:glutamate symporter -1.9  
L-Glutamic acid HMPREF1058_RS20480 site-specific integrase +2.1  
L-Glutamine HMPREF1058_RS00470 redox-sensing transcriptional repressor Rex +1.9  
L-Glutamine HMPREF1058_RS0119295 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain +1.3  
L-Glutamine HMPREF1058_RS01230 redoxin domain-containing protein +2.2  
L-Glutamine HMPREF1058_RS01910 hypothetical protein +1.8  
L-Glutamine HMPREF1058_RS03590 hypothetical protein +1.5  
L-Glutamine HMPREF1058_RS03605 glycosyltransferase family 2 protein +1.9  
L-Glutamine HMPREF1058_RS03610 glycosyltransferase family 4 protein +2.2  
L-Glutamine HMPREF1058_RS03620 glycosyltransferase +1.9  
L-Glutamine HMPREF1058_RS03795 MATE family efflux transporter -2.4  
L-Glutamine HMPREF1058_RS04010 molecular chaperone HtpG +1.2  
L-Glutamine HMPREF1058_RS04690 cation:proton antiporter -1.6  
L-Glutamine HMPREF1058_RS05410 RNA polymerase sigma factor +1.9  
L-Glutamine HMPREF1058_RS05860 insulinase family protein -1.9  
L-Glutamine HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme +1.3  
L-Glutamine HMPREF1058_RS06535 hypothetical protein variable  
L-Glutamine HMPREF1058_RS06705 acyltransferase variable  
L-Glutamine HMPREF1058_RS06710 DUF4422 domain-containing protein +3.9  
L-Glutamine HMPREF1058_RS06715 glycosyltransferase variable  
L-Glutamine HMPREF1058_RS06735 ABC transporter permease variable  
L-Glutamine HMPREF1058_RS06740 glycosyltransferase +4.0  
L-Glutamine HMPREF1058_RS06765 glycosyltransferase family 1 protein +2.2  
L-Glutamine HMPREF1058_RS06800 response regulator +1.5  
L-Glutamine HMPREF1058_RS07620 long-chain fatty acid--CoA ligase +4.2  
L-Glutamine HMPREF1058_RS11565 murein L,D-transpeptidase catalytic domain family protein +1.6  
L-Glutamine HMPREF1058_RS12825 alkaline phosphatase +1.6  
L-Glutamine HMPREF1058_RS14690 zinc ribbon domain-containing protein -1.5  
L-Glutamine HMPREF1058_RS14810 pyridoxal phosphate-dependent aminotransferase -1.5  
L-Glutamine HMPREF1058_RS15045 family 20 glycosylhydrolase +1.4  
L-Glutamine HMPREF1058_RS15060 outer membrane beta-barrel protein +1.4  
L-Glutamine HMPREF1058_RS15585 transporter substrate-binding domain-containing protein +1.8  
L-Glutamine HMPREF1058_RS15850 transglycosylase SLT domain-containing protein +1.5 Yes
L-Glutamine HMPREF1058_RS16045 hypothetical protein +1.8  
L-Glutamine HMPREF1058_RS16150 glycosyltransferase +2.5  
L-Glutamine HMPREF1058_RS17695 YihY/virulence factor BrkB family protein variable  
L-Glutamine HMPREF1058_RS18425 ABC-F family ATP-binding cassette domain-containing protein +1.5  
L-Glutamine HMPREF1058_RS18440 hypothetical protein +1.9  
L-Glutamine HMPREF1058_RS18450 oligosaccharide repeat unit polymerase +1.6  
L-Glutamine HMPREF1058_RS18460 glycosyltransferase +1.9  
L-Glutamine HMPREF1058_RS18465 glycosyltransferase family 4 protein +1.8  
L-Glutamine HMPREF1058_RS18775 S9 family peptidase +2.8  
L-Glutamine HMPREF1058_RS20210 glycosyltransferase +2.3  
L-Serine HMPREF1058_RS00705 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -1.7  
L-Serine HMPREF1058_RS01230 redoxin domain-containing protein +1.6  
L-Serine HMPREF1058_RS02760 peptidylprolyl isomerase +1.7 Yes
L-Serine HMPREF1058_RS02855 DEAD/DEAH box helicase +1.2  
L-Serine HMPREF1058_RS03795 MATE family efflux transporter variable  
L-Serine HMPREF1058_RS04265 Cof-type HAD-IIB family hydrolase -1.9  
L-Serine HMPREF1058_RS04690 cation:proton antiporter -2.4 Yes
L-Serine HMPREF1058_RS05410 RNA polymerase sigma factor +2.7  
L-Serine HMPREF1058_RS06105 ABC transporter permease -1.3  
L-Serine HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme variable  
L-Serine HMPREF1058_RS06405 Na+/H+ antiporter NhaA -1.3 Yes
L-Serine HMPREF1058_RS06800 response regulator +1.6  
L-Serine HMPREF1058_RS06890 glutamine synthetase III -3.8 Yes
L-Serine HMPREF1058_RS06905 hypothetical protein variable  
L-Serine HMPREF1058_RS06920 glutamate synthase large subunit variable Yes
L-Serine HMPREF1058_RS07620 long-chain fatty acid--CoA ligase variable Yes
L-Serine HMPREF1058_RS09160 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase variable  
L-Serine HMPREF1058_RS11565 murein L,D-transpeptidase catalytic domain family protein +2.0  
L-Serine HMPREF1058_RS11950 HAD family phosphatase +1.3  
L-Serine HMPREF1058_RS14810 pyridoxal phosphate-dependent aminotransferase variable  
L-Serine HMPREF1058_RS15535 glycoside hydrolase family 25 protein variable  
L-Serine HMPREF1058_RS16275 FAD-dependent oxidoreductase +1.4  
L-Serine HMPREF1058_RS16810 hypothetical protein +1.3  
L-Serine HMPREF1058_RS17470 transporter +1.4 Yes