Specific Phenotypes for Bacteroides thetaiotaomicron VPI-5482 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Ammonium chloride BT1219 conserved hypothetical protein (NCBI ptt file) +1.1  
Ammonium chloride BT3080 cysteine synthase A (NCBI ptt file) variable  
Ammonium chloride BT3254 dipeptidyl peptidase IV (NCBI ptt file) variable  
Ammonium chloride BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) variable  
Cytidine BT2140 putative sodium-dependent transporter (NCBI ptt file) -2.5  
Cytidine BT2791 uracil phosphoribosyltransferase (NCBI ptt file) +2.9  
D-Glucosamine Hydrochloride BT2140 putative sodium-dependent transporter (NCBI ptt file) -2.9  
D-Glucosamine Hydrochloride BT4656 N-acetylglucosamine-6-sulfatase precursor (NCBI ptt file) +2.2  
D-Serine BT1480 hypothetical protein (NCBI ptt file) -1.3  
D-Serine BT2140 putative sodium-dependent transporter (NCBI ptt file) -1.1  
D-Serine BT3127 conserved hypothetical protein (NCBI ptt file) +2.2  
D-Serine BT4719 hypothetical protein (NCBI ptt file) -2.0  
Gly-DL-Asp BT0580 putative H+/peptide symporter (NCBI ptt file) -1.7  
L-Asparagine BT3080 cysteine synthase A (NCBI ptt file) -3.3  
L-Asparagine BT3763 rhamnulose kinase/L-fuculose kinase (NCBI ptt file) -1.3  
L-Asparagine BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) -1.4  
L-Asparagine BT4516 conserved hypothetical protein (NCBI ptt file) +1.3  
L-Aspartic Acid p5482_12 TraI-like protein (NCBI) +1.7  
L-Aspartic Acid p5482_15 TraM-like protein (NCBI) +1.1  
L-Aspartic Acid BT0591 hypothetical protein (NCBI ptt file) +1.9  
L-Aspartic Acid BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) +2.0  
L-Aspartic Acid BT1838 putative alanyl dipeptidyl peptidase (NCBI ptt file) +1.1  
L-Aspartic Acid BT2411 hypothetical protein (NCBI ptt file) +2.4  
L-Aspartic Acid BT2650 conserved hypothetical protein (NCBI ptt file) -1.3  
L-Aspartic Acid BT2697 DNA mismatch repair protein mutS (NCBI ptt file) +1.0  
L-Aspartic Acid BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) -3.3 Yes
L-Aspartic Acid BT2817 putative TonB-dependent receptor (NCBI ptt file) -1.2  
L-Aspartic Acid BT2833 hypothetical protein (NCBI ptt file) -2.4  
L-Aspartic Acid BT2936 putative glycosyltransferase (NCBI ptt file) +2.9  
L-Aspartic Acid BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) +1.9  
L-Aspartic Acid BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) -1.5  
L-Aspartic Acid BT4208 phosphohydrolase (NCBI ptt file) +1.3  
L-Aspartic Acid BT4737 pyruvate formate-lyase activating enzyme (NCBI ptt file) +3.5  
L-Aspartic Acid BT4738 formate acetyltransferase (NCBI ptt file) +3.5  
L-Glutamine BT0183 transglycosylase (NCBI ptt file) +1.9 Yes
L-Glutamine BT1037 conserved hypothetical protein (NCBI ptt file) variable  
L-Glutamine BT1968 transcriptional regulator (NCBI ptt file) +1.4  
L-Glutamine BT2140 putative sodium-dependent transporter (NCBI ptt file) -2.2  
L-Glutamine BT2833 hypothetical protein (NCBI ptt file) -1.6  
L-Glutamine BT2840 O-methyltransferase (NCBI ptt file) +1.7  
L-Glutamine BT3080 cysteine synthase A (NCBI ptt file) -3.3  
L-Glutamine BT3352 haloacid dehalogenase-like hydrolase (NCBI ptt file) -1.7  
L-Glutamine BT4005 hypothetical protein (NCBI ptt file) variable  
L-Glutamine BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) variable  
L-Glutamine BT4128 conserved hypothetical protein (NCBI ptt file) -1.2  
L-Glutamine BT4516 conserved hypothetical protein (NCBI ptt file) variable  
L-Glutamine BT4631 putative arylsulfatase precursor (NCBI ptt file) variable  
L-Leucine BT1742 carbon starvation protein A (NCBI ptt file) +1.3  
L-Leucine BT2833 hypothetical protein (NCBI ptt file) -1.8  
L-Serine BT0259 putative amidohydrolase (NCBI ptt file) +1.3  
L-Serine BT0463 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) +1.6  
L-Serine BT0989 two-component system sensor histidine kinase (NCBI ptt file) +1.5  
L-Serine BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) +1.9  
L-Serine BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) +1.5  
L-Serine BT2130 uracil-DNA glycosylase (NCBI ptt file) -1.9  
L-Serine BT2140 putative sodium-dependent transporter (NCBI ptt file) -1.4  
L-Serine BT2150 methylglyoxal synthase (NCBI ptt file) -2.1  
L-Serine BT2154 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) -1.2  
L-Serine BT2552 putative butyrate kinase (NCBI ptt file) +1.5  
L-Serine BT2783 transcriptional regulator (NCBI ptt file) -1.2  
L-Serine BT3080 cysteine synthase A (NCBI ptt file) -3.4  
L-Serine BT3356 6-phosphofructokinase (NCBI ptt file) +1.5  
L-Serine BT3860 conserved hypothetical protein (NCBI ptt file) variable  
L-Serine BT4128 conserved hypothetical protein (NCBI ptt file) -1.6  
L-Serine BT4678 L-serine dehydratase (NCBI ptt file) -1.4 Yes
L-Valine BT1742 carbon starvation protein A (NCBI ptt file) +1.5  
L-Valine BT2411 hypothetical protein (NCBI ptt file) +1.6  
L-Valine BT2833 hypothetical protein (NCBI ptt file) -1.5  
L-Valine BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) +1.9  
L-Valine BT3397 hypothetical protein (NCBI ptt file) +1.6  
L-Valine BT4242 putative transporter (NCBI ptt file) +1.3  
Thymidine BT2140 putative sodium-dependent transporter (NCBI ptt file) -2.8  
Thymidine BT3263 putative deoxyribose-phosphate aldolase (NCBI ptt file) -2.5  
Thymidine BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) -1.4