Specific Phenotypes for Burkholderia phytofirmans PsJN in nitrogen source experiments

Condition Gene Description Fitness Cons.
Carnitine Hydrochloride BPHYT_RS22375 4-hydroxybenzoyl-CoA thioesterase -3.9 Yes
Carnitine Hydrochloride BPHYT_RS22380 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) -3.3 Yes
Carnitine Hydrochloride BPHYT_RS22385 hypothetical protein -3.5 Yes
Carnitine Hydrochloride BPHYT_RS22390 glycine/betaine ABC transporter substrate-binding protein -3.2 Yes
Carnitine Hydrochloride BPHYT_RS22395 AraC family transcriptional regulator -2.8 Yes
Carnitine Hydrochloride BPHYT_RS25105 sarcosine oxidase subunit beta -2.4 Yes
Carnitine Hydrochloride BPHYT_RS25115 sarcosine oxidase subunit alpha -3.1 Yes
Carnitine Hydrochloride BPHYT_RS25205 electron transfer flavoprotein subunit alpha -3.9 Yes
D-Alanine BPHYT_RS02550 ammonia channel protein -1.1  
D-Alanine BPHYT_RS12965 fatty acid hydroxylase -3.0  
D-Alanine BPHYT_RS12970 hypothetical protein -3.8  
D-Alanine BPHYT_RS14785 AsnC family transcriptional regulator -3.6 Yes
D-Alanine BPHYT_RS14790 D-amino acid dehydrogenase -5.1 Yes
D-Alanine BPHYT_RS18580 short-chain dehydrogenase -1.4  
L-Alanine BPHYT_RS13655 GTP pyrophosphokinase -4.0  
L-Alanine BPHYT_RS14785 AsnC family transcriptional regulator -4.8 Yes
L-Asparagine BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -1.9  
L-Asparagine BPHYT_RS02305 methionine synthase -1.5  
L-Asparagine BPHYT_RS02310 5-methyltetrahydrofolate--homocysteine methyltransferase -1.3  
L-Asparagine BPHYT_RS08815 L-asparaginase (EC 3.5.1.1) (from data) -5.2 Yes
L-Asparagine BPHYT_RS12185 succinyldiaminopimelate aminotransferase -1.4  
L-Citrulline BPHYT_RS06920 iron permease FTR1 -3.0  
L-Citrulline BPHYT_RS06925 membrane protein -1.6  
L-Citrulline BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase -1.4 Yes
L-Citrulline BPHYT_RS35155 TonB-denpendent receptor -1.0  
L-Glutamic acid monopotassium salt monohydrate BPHYT_RS02305 methionine synthase -1.8  
L-Glutamic acid monopotassium salt monohydrate BPHYT_RS02310 5-methyltetrahydrofolate--homocysteine methyltransferase -1.6  
L-Glutamic acid monopotassium salt monohydrate BPHYT_RS16695 glutamate/aspartate ABC transporter permease GltJ -1.3 Yes
L-Glutamine BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -3.6  
L-Glutamine BPHYT_RS02305 methionine synthase -1.3  
L-Glutamine BPHYT_RS02310 5-methyltetrahydrofolate--homocysteine methyltransferase -1.4  
L-Glutamine BPHYT_RS05215 DNA-binding protein -2.1  
L-Isoleucine BPHYT_RS00600 histidine kinase +1.1  
L-Isoleucine BPHYT_RS04055 PST family polysaccharide export protein +1.3  
L-Isoleucine BPHYT_RS13280 2-isopropylmalate synthase -2.3 Yes
L-Isoleucine BPHYT_RS15600 ABC transporter ATP-binding protein -1.8  
L-Isoleucine BPHYT_RS16285 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -2.4 Yes
L-Isoleucine BPHYT_RS32700 membrane protein -2.1  
L-Lysine BPHYT_RS01885 branched-chain amino acid ABC transporter substrate-binding protein -2.2  
L-Lysine BPHYT_RS10285 hypothetical protein +3.0  
L-Lysine BPHYT_RS15595 ABC transporter -3.4  
L-Lysine BPHYT_RS15600 ABC transporter ATP-binding protein -2.2  
L-Lysine BPHYT_RS15605 ABC transporter permease -2.2  
L-Lysine BPHYT_RS16895 competence damage-inducible protein A -1.1  
L-Lysine BPHYT_RS32650 aldehyde dehydrogenase -3.8 Yes
L-Phenylalanine BPHYT_RS01885 branched-chain amino acid ABC transporter substrate-binding protein -1.8 Yes
L-Phenylalanine BPHYT_RS02015 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data) -1.8 Yes
L-Phenylalanine BPHYT_RS15595 ABC transporter -2.1  
L-Phenylalanine BPHYT_RS15600 ABC transporter ATP-binding protein -1.8  
L-Phenylalanine BPHYT_RS15605 ABC transporter permease -1.5  
L-Phenylalanine BPHYT_RS17335 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) -2.5 Yes
L-Phenylalanine BPHYT_RS17340 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) -4.0  
L-Proline BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -1.8  
L-Proline BPHYT_RS05480 NAD synthetase -1.4  
L-Proline BPHYT_RS15590 amino acid ABC transporter ATPase -4.4 Yes
L-Proline BPHYT_RS15595 ABC transporter -3.0  
L-Proline BPHYT_RS15600 ABC transporter ATP-binding protein -4.0  
L-Proline BPHYT_RS15605 ABC transporter permease -3.5  
L-Proline BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein -2.6  
L-Proline BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase -4.8 Yes
N-Acetyl-D-Glucosamine BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) -2.5 Yes
N-Acetyl-D-Glucosamine BPHYT_RS02735 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) -3.6 Yes
N-Acetyl-D-Glucosamine BPHYT_RS02745 N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) -2.5 Yes
N-Acetyl-D-Glucosamine BPHYT_RS14055 aldose epimerase -1.5  
Putrescine Dihydrochloride BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C -1.2  
Putrescine Dihydrochloride BPHYT_RS14785 AsnC family transcriptional regulator -2.3  
Putrescine Dihydrochloride BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase -1.7  
Putrescine Dihydrochloride BPHYT_RS23160 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -3.7 Yes
Uridine BPHYT_RS13300 Dihydropyrimidinase (EC 3.5.2.2) (from data) -5.4 Yes
Uridine BPHYT_RS21555 beta alanine--pyruvate aminotransferase -2.7 Yes