Specific Phenotypes for Herbaspirillum seropedicae SmR1 in nitrogen fixation experiments

Condition Gene Description Fitness Cons.
D-Glucose HSERO_RS00415 hypothetical protein -4.3  
D-Glucose HSERO_RS00425 ammonia channel protein -2.8 Yes
D-Glucose HSERO_RS01920 50S ribosomal protein L11 methyltransferase variable  
D-Glucose HSERO_RS02555 chemotaxis protein variable  
D-Glucose HSERO_RS03130 chemotaxis protein CheY -1.2  
D-Glucose HSERO_RS04290 DNA-binding protein +2.7  
D-Glucose HSERO_RS04295 diguanylate cyclase -1.2  
D-Glucose HSERO_RS04950 deacetylase -2.3  
D-Glucose HSERO_RS08020 heavy metal translocating P-type ATPase -1.7  
D-Glucose HSERO_RS08995 hypothetical protein -1.6  
D-Glucose HSERO_RS09005 type I secretion protein HlyD variable  
D-Glucose HSERO_RS09020 hemolysin D -1.2  
D-Glucose HSERO_RS10545 protein disaggregation chaperone -1.6  
D-Glucose HSERO_RS14180 cysteine desulfurase -3.7  
D-Glucose HSERO_RS14190 iron--sulfur cluster insertion protein ErpA -3.3  
D-Glucose HSERO_RS14200 molecular chaperone HscA -3.7  
D-Glucose HSERO_RS14205 ferredoxin [2Fe-2S]-type protein -3.7  
D-Glucose HSERO_RS14210 homocitrate synthase -2.7 Yes
D-Glucose HSERO_RS14215 nitrogen fixation protein NifW -4.7  
D-Glucose HSERO_RS14220 protein fixA -3.9  
D-Glucose HSERO_RS14225 protein fixB -4.2 Yes
D-Glucose HSERO_RS14230 protein fixC -3.5  
D-Glucose HSERO_RS14270 hypothetical protein -3.1  
D-Glucose HSERO_RS14280 nitrogenase molybdenum-cofactor synthesis protein NifN protein -4.3 Yes
D-Glucose HSERO_RS14285 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE -4.1 Yes
D-Glucose HSERO_RS14290 nitrogenase molybdenum-iron protein beta chain -3.7 Yes
D-Glucose HSERO_RS14295 nitrogenase molybdenum-iron protein alpha chain -4.0 Yes
D-Glucose HSERO_RS14300 nitrogenase iron protein -4.2 Yes
D-Glucose HSERO_RS14335 aminotransferase DegT -2.8  
D-Glucose HSERO_RS14350 cysteine desulfurase -2.4  
D-Glucose HSERO_RS14385 FeMo cofactor biosynthesis protein NifB -3.9 Yes
D-Glucose HSERO_RS14390 ATPase AAA -4.2 Yes
D-Glucose HSERO_RS14405 molybdenum transport protein ModE variable  
D-Glucose HSERO_RS15790 chemotaxis protein -3.1  
D-Glucose HSERO_RS16340 transcriptional regulator -1.5  
D-Glucose HSERO_RS21980 membrane protein -2.1  
D-Glucose HSERO_RS22760 N-acetylglucosamine-6-phosphate deacetylase variable  
D-Glucose HSERO_RS22795 N-acetyltransferase -2.0  
D-Glucose HSERO_RS23180 membrane protein -1.2  
L-Malic acid HSERO_RS00415 hypothetical protein -2.4  
L-Malic acid HSERO_RS00425 ammonia channel protein -2.7  
L-Malic acid HSERO_RS01920 50S ribosomal protein L11 methyltransferase -2.0  
L-Malic acid HSERO_RS02615 polymerase -1.6  
L-Malic acid HSERO_RS04290 DNA-binding protein +1.5  
L-Malic acid HSERO_RS04295 diguanylate cyclase -1.4  
L-Malic acid HSERO_RS10545 protein disaggregation chaperone -2.6  
L-Malic acid HSERO_RS10615 transcription elongation factor GreB -1.5  
L-Malic acid HSERO_RS11405 transcriptional regulator -2.0  
L-Malic acid HSERO_RS14180 cysteine desulfurase -1.3  
L-Malic acid HSERO_RS14190 iron--sulfur cluster insertion protein ErpA -3.0  
L-Malic acid HSERO_RS14210 homocitrate synthase -3.5  
L-Malic acid HSERO_RS14215 nitrogen fixation protein NifW -3.5 Yes
L-Malic acid HSERO_RS14220 protein fixA -4.4  
L-Malic acid HSERO_RS14225 protein fixB -4.5 Yes
L-Malic acid HSERO_RS14230 protein fixC -4.5 Yes
L-Malic acid HSERO_RS14280 nitrogenase molybdenum-cofactor synthesis protein NifN protein -4.4  
L-Malic acid HSERO_RS14285 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE -4.9 Yes
L-Malic acid HSERO_RS14290 nitrogenase molybdenum-iron protein beta chain -4.1 Yes
L-Malic acid HSERO_RS14295 nitrogenase molybdenum-iron protein alpha chain -4.2 Yes
L-Malic acid HSERO_RS14300 nitrogenase iron protein -4.1 Yes
L-Malic acid HSERO_RS14335 aminotransferase DegT -1.7 Yes
L-Malic acid HSERO_RS14385 FeMo cofactor biosynthesis protein NifB -4.1 Yes
L-Malic acid HSERO_RS14390 ATPase AAA -3.6  
L-Malic acid HSERO_RS15790 chemotaxis protein -3.7  
L-Malic acid HSERO_RS21195 hypothetical protein -1.7  
L-Malic acid HSERO_RS21210 membrane protein -1.7  
L-Malic acid HSERO_RS21220 hypothetical protein -1.7  
L-Malic acid HSERO_RS21225 hypothetical protein -1.7  
L-Malic acid HSERO_RS21980 membrane protein -1.0