Specific Phenotypes for Bifidobacterium breve UCC2003 in mouse preculture experiments

Condition Gene Description Fitness Cons.
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS10645 Hsp20/alpha crystallin family protein -3.3  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS11095 DUF4862 domain-containing protein -3.2  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS11100 ROK family protein -3.6  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS11105 putative N-acetylmannosamine-6-phosphate 2-epimerase -2.2  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS11165 serine/threonine protein phosphatase variable  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS12515 LacI family transcriptional regulator -2.0  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS12540 MFS transporter +1.7  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS15160 PhoH family protein -2.4  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS15560 aminotransferase class V-fold PLP-dependent enzyme -6.8  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS16140 long-chain fatty acid--CoA ligase +2.4  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS16680 prephenate dehydratase (EC 4.2.1.51) (from data) -2.5  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS17200 hydroxyethylthiazole kinase -6.2  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS17215 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -5.1  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs BBR_RS19295 ATP-dependent DNA helicase RecG -1.4